Asparagus officinalis (garden asparagus): 109843874
Help
Entry
109843874 CDS
T05243
Name
(RefSeq) replication factor C subunit 1 isoform X1
KO
K10754
replication factor C subunit 1
Organism
aof
Asparagus officinalis (garden asparagus)
Pathway
aof03030
DNA replication
aof03410
Base excision repair
aof03420
Nucleotide excision repair
aof03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
aof00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
109843874
03410 Base excision repair
109843874
03420 Nucleotide excision repair
109843874
03430 Mismatch repair
109843874
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
aof03032
]
109843874
03400 DNA repair and recombination proteins [BR:
aof03400
]
109843874
DNA replication proteins [BR:
aof03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
109843874
DNA repair and recombination proteins [BR:
aof03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
109843874
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RFC1
BRCT
AAA
AAA_lid_RFC1
RCF1-5-like_lid
AAA_22
PTCB-BRCT
Rad17
AAA_30
AAA_5
AAA_18
Gp44_lid
BRCT_2
RNA_helicase
RuvB_N
nSTAND3
AAA_19
Sigma54_activ_2
AAA_14
RsgA_GTPase
CC_CEP63-bind_CEP152
5_3_exonuc
Motif
Other DBs
NCBI-GeneID:
109843874
NCBI-ProteinID:
XP_020268424
LinkDB
All DBs
Position
5:72910974..72930273
Genome browser
AA seq
969 aa
AA seq
DB search
MSDIRKWFIKQHDKGNGSAAPKPTKPPEKPSAPSAVEKPVERGQERRKTSKYFANSDCSK
EQAAKAVKDEVMTEKNTPAKRKTTQKSGEDVKPTPVKKIRKVEEDDDDFEPPSSEKKKAV
EAKPPKKPIVKKSVVMDESDDDNEEVEEKEVKTPTKSGGRGRGGRGSGAGPAASAGRGRG
GGRGGFMNFGERKDPPHKGEKEVPEGAPECLAGLTFVISGTLDSLEREEAEDLIKRHGGR
VTGSVSKKTNFLLADEDIGGKKSAKAKELGTKFLTEDELFDMIRKSKPAKAPVKEDLTKK
HEEKANKSHMKSSPMKVKVEDDQPGTARKTPVKSAPSNVSLSKRKAQIGEGSSLTWTEKY
RPKVPNDLIGNPSIVKQLHDWLAHWHEHFLHNGQKGKGKRQNDSGLKKAVLLSGTPGIGK
STSAKLISQMLGFEAIEVNASDSRGKADNKIFKGVSGSTSNSIKELISNEILSSSKKWSE
HKKTVLIMDEVDGMSAGDRGGVADLISSIKVSKVPIICICNDRYSQKLKSLVSYCLPLNF
RKPTKQQMAKRLMQIATAEGLQVNNITLEELADRVNGDMRMAINQLHYMSLSHSIINYDD
IRARLLSSAKDEDISPFAAVDKLFGFNGGKLRMDERIDLSMSDPDLVPLIIQENYINYRP
VSAGKDENGVKRLNLLAQTAESIADGDIVNVQIRRYRQWQLSQAGSLASCIIPAALMHGN
REMLEQGGPNYNRFGGWLGKNSTMGKNLRLLEDAHVHILASQASNIDRVTLRIDYFTLLL
KQLTEPLRVMPKDTAVQKVVEFMNAYSLSQEDFDTIMELSKFKTHPNPLEGIQPTLKAAL
TREYKEASKTRVVRAPDLINLPGIKKAPKKRIAAILEPVDAVDSGLPEENGNGLVESDEE
NSSEADEISGEAEPKLDLQSDKSKGIQVQLDLKTDGKSKAKKAPANKSRASGSSEKGGQS
SGRGGKRKR
NT seq
2910 nt
NT seq
+upstream
nt +downstream
nt
atgtcggatataaggaagtggttcattaagcagcacgacaaaggcaacggcagcgctgcg
cccaaacccaccaagcccccggagaaaccctcggctccttctgccgtcgagaaacccgtt
gaacgaggtcaagagaggaggaaaaccagcaagtattttgcgaattctgactgttctaaa
gaacaggcggctaaagctgttaaagatgaggttatgactgagaaaaataccccagcgaag
aggaagaccacacagaagagtggggaggatgtgaaacccacgccggtgaaaaagatccgt
aaggtagaagaagatgatgacgactttgaaccgccatccagcgagaagaagaaggccgtt
gaggctaagccgcccaagaaaccaattgtaaagaaatctgttgttatggatgaaagtgat
gatgacaatgaagaagtcgaggagaaagaggtaaagacgccgacaaaatcgggtgggaga
ggcagaggcgggagaggatcaggtgcgggtcccgcggcttctgcaggaaggggaagagga
ggggggaggggtgggttcatgaattttggggagaggaaagatccaccacataaaggggag
aaggaagttccggagggtgctcctgaatgcttggctggccttacattcgttataagcggc
acacttgatagtttggaacgggaggaagcggaggatttgattaaacggcatggtgggcgg
gttactgggtctgtcagcaagaaaactaattttcttttagctgacgaagatattggtgga
aagaaatcagccaaagccaaggaactgggtaccaagtttttaactgaagatgaattgttt
gacatgattcgaaaatcaaagcctgcaaaagctccagtaaaagaagacctaacaaagaaa
catgaagagaaggcaaacaagtctcatatgaagagcagtcctatgaaggtaaaagtcgaa
gatgatcaacctggcactgcaagaaaaactccagtgaaaagtgcgccatccaatgtttct
cttagcaagagaaaagcacaaattggtgaaggtagttcattgacttggactgagaaatac
cgaccaaaggttccaaacgacttaattggcaacccgtctattgttaaacaactacatgat
tggctggcacactggcatgaacattttttgcataatggccagaaaggaaagggcaaaaga
caaaatgacagtggattgaaaaaagctgttctgctaagtggaacgcctgggattggtaaa
agcacatcagcaaaattgattagccaaatgctaggattcgaggcaatcgaggttaatgca
agtgatagtcgaggaaaggctgataacaaaatttttaaaggagttagtggaagcacttca
aattcaattaaagagctcattagcaatgaaatcttgagtagcagcaaaaaatggtctgag
cataaaaaaactgtattgattatggatgaggtagatgggatgtctgcaggagataggggc
ggagttgcagatcttatttctagcataaaagtttctaaggttcctatcatttgcatctgt
aatgatcgctatagtcagaagctcaagagtcttgttagctactgtttaccactcaatttc
aggaagcctactaagcaacagatggcaaagaggctgatgcaaattgcaactgcagaaggt
cttcaagttaataatattacgcttgaagaacttgcagatagagttaatggtgatatgcga
atggcaataaatcagttgcattacatgagcctttcacactcaatcattaactatgatgac
ataagagcacgccttctaagcagtgcaaaagatgaagatatttcaccttttgcagcagtt
gacaagttgtttggattcaatggaggaaagttacgaatggatgagaggattgatttgagc
atgagtgatcctgacctggttccgcttattattcaggaaaactatatcaattatcgacca
gtttctgctgggaaggatgaaaatggtgtgaagaggttgaatttgcttgctcagactgcg
gagtctattgcagatggagacatagtcaacgtgcagatccgaagatataggcagtggcag
ttatcccaagcgggttcacttgcttcttgtattattccggctgcgttgatgcatggcaac
agggagatgcttgagcagggagggcctaattataacagatttggtggatggttaggaaag
aattcaacaatgggaaagaatttgaggctgttggaggatgcccatgtacatatccttgct
tcccaagcatctaacattgacagggtgactttgcggattgactacttcactcttctgcta
aaacaactgacagagcctcttagagtaatgcctaaggatactgctgttcagaaggttgtg
gagttcatgaatgcctattctttaagtcaagaggactttgatacaattatggagctatcc
aagttcaagacacatccgaacccattggaaggcattcaacctacacttaaagcagcattg
actagggaatacaaggaagctagcaaaactcgtgtcgtaagggctccggatttgatcaat
ctcccgggtatcaagaaggctcccaaaaagaggatcgctgcaattttggagccagtggat
gcagttgacagtggtttgccagaagaaaatggaaatggtttggttgaaagtgatgaagag
aattcttctgaggctgatgagatctctggggaggcagagccaaagctggacctccagagt
gataaatcaaaagggatccaagtgcagcttgatttaaaaacggatgggaaatcaaaggcc
aaaaaggcgcctgcaaataaatcgagagcatcaggttcatctgagaaaggtggtcagagt
tcagggaggggagggaagaggaagaggtaa
DBGET
integrated database retrieval system
