Asparagus officinalis (garden asparagus): 109843906
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Entry
109843906 CDS
T05243
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH3 isoform X1
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
aof
Asparagus officinalis (garden asparagus)
Pathway
aof03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
aof00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
109843906
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aof03019
]
109843906
03012 Translation factors [BR:
aof03012
]
109843906
Enzymes [BR:
aof01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
109843906
Messenger RNA biogenesis [BR:
aof03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
109843906
Translation factors [BR:
aof03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
109843906
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
HA2_N
DEAD
dsrm
AAA_22
AAA_19
nSTAND3
ABC_tran
T2SSE
ATPase
Motif
Other DBs
NCBI-GeneID:
109843906
NCBI-ProteinID:
XP_020268467
LinkDB
All DBs
Position
5:73916186..73941496
Genome browser
AA seq
1151 aa
AA seq
DB search
MPPGLGLLLSLHRSTATPLNRRVNSLPFLLRRSILSSYNGGDFRVRSWVSMQRGYCDYYA
VEQFSDDEYECEFDNQKPSSSVANIDEWRFKLSLLLRNNEEQEIISKDRRDRRDYEQISN
LAKRMGLYSEIYGKVVVASKVPLPNYRPDLDDKRPQREVVIPLGLQRRAEGLLQEHLDRN
LVVPGKHNESLGVNVNEDIRLDENEDSLVDRSVMEKILQRKSSRMRNAQRAWQESPEGVK
MVKFRTSLPAYKEKDRLLASIARNQVLVISGETGCGKTTQLPQYVLESEIETGRGAFCNI
ICTQPRRISAMAVSERVSMERGENLGETVGYKVRLEGMKGKNTHLLFCTSGILLRRLLGD
RNLNGVTHVFVDEIHERGMNEDFLLIVLKDLLPRRRDLRLILMSATLNAELFSNFFGGAP
TIHIPGFTYPVRAHFLEDILEITGYKLTSFNQIDDYGQDKLWKTQRQLLPRKRKNQITAL
VEDTLKKSTFESYSSKARDSLANWTPDCIGFNLIEAVLCHICRKERPGAALVFMTGWDDI
NCLRDQLKAHPLLGDPNRVLLLTCHGSMATSEQKLIFEKPPPNVRKIVLATNMAEASITI
NDIVFVVDCGKAKETTYDALNNTPCLLPSWISKASARQRKGRAGRVQPGECYHLYPRCVY
DAFADYQLPELLRTPLNSLCLQIKSLQIGTIGEFLSAALQPPEALAVQNAVEFLKMIGAL
DEGENLTNLGRYLSMLPVDPKLGKMLIMGAVFRCLDPVLTVVSGLSVRDPFLLPQDKKDL
AGTAKSRFSAKDYSDHMALVRAYEGWKDAEREGSGYDYCWRNFLSAQTLQAIHSLRKQFN
FILKDVGLLDADSNTSNSLSHNQSLVRAIICSGLFPGIASVVHREKSMSFKTMDDGQVLL
YANSVNAKYQTIPYPWLVFGEKVKVNTVFIRDSTGVSDSILLLFGGNLLKGEMAGHLKML
NGYIDFFMDPSLAECYWNLKEELDKLVQKKLQDPNTDIHKEGKYLMLAIQELVTADLCEG
RFVFGRETKRARLTSGNTDNKSRIIKDGMNPKSLLQTLLMRAGHSPPKYKTKHLKTNEFR
ALAEFKGMQFVGKPKKSKQLAERDAAIEALGWLTQTSDKSPQDDEDDNPIDITDNMLKLL
NKRRPKRQRSK
NT seq
3456 nt
NT seq
+upstream
nt +downstream
nt
atgcctcctggattagggctgcttctgagcctccatagatcgacggcgacgccattgaat
cgaagagttaattctttgcctttcttgctgaggcgttcgattctttcgtcttataatggc
ggagattttagggttcggagttgggtatcgatgcagagaggttattgtgattattatgcg
gttgagcagttttcggatgacgagtatgagtgtgaattcgacaatcagaagccatcttcc
tcggtggccaacatagatgaatggaggtttaagcttagccttcttttacgcaataatgaa
gagcaagagattatctccaaagatagaagagatcgccgtgattatgagcaaatatctaac
cttgcgaaaaggatgggcctttatagtgaaatttatgggaaggtggtggttgctagcaaa
gttcctctgccaaattatagacctgatctagatgataaaaggcctcagagagaggtggtt
atccctcttggtcttcaaagaagggctgagggtctacttcaagagcatcttgatagaaat
ctggtggtgcctggaaagcacaatgagagtttaggagttaatgttaatgaagatataaga
ctggacgaaaatgaagattctttggttgatagatcagttatggaaaaaattcttcagaga
aagagttcgagaatgcggaatgcgcagagagcctggcaggaatcacctgagggtgtaaag
atggtcaagttcaggacatctcttcctgcctacaaggaaaaagatagattattggcatcc
attgcacggaatcaggtgctagtgatttctggggaaactggatgcggtaaaaccacccag
cttcctcaatatgtgttagaatctgagatagaaactggtcgcggagcattctgcaacatc
atatgtacccaacctcgaagaatatctgctatggcagtttcggaaagagtttccatggaa
agaggggagaatcttggtgaaacagttggttacaaagttcgattagagggaatgaaagga
aaaaatacccatctgcttttttgtaccagtggtattttgctgagaaggttgctgggagac
cgtaatttgaatggtgtaacacatgtctttgttgatgaaattcatgaaaggggcatgaat
gaagattttttgctgattgtgttgaaggatcttcttccacggcgtagggatttgagattg
attttgatgagtgccactttgaatgctgagctattttcaaacttctttggaggggcgccc
acaatccatattccgggctttacctatcctgtaagagcacactttctggaagacatattg
gaaattactggatacaaattgacttcattcaaccaaattgatgattatggtcaagacaag
ttgtggaagactcagaggcagctactgccacgaaagcgaaagaatcagattactgcactt
gttgaggacacacttaaaaagtctacctttgaaagctacagttccaaagcacgtgattcc
ttagccaactggacacctgattgcattgggtttaaccttattgaggctgttttgtgtcat
atatgccgaaaagaacggccaggtgctgcattagtttttatgacaggttgggatgatatt
aattgtctaagagaccagctaaaggcacatcctctgttgggagatccgaacagggttctg
ctgctgacatgccatgggtcaatggctacttctgagcagaaactcatatttgagaaacca
cctcctaatgtgcgtaagatcgttctcgcaacaaacatggcagaagcaagtatcacaatt
aatgatattgtttttgtcgtcgattgtggaaaggcgaaggaaaccacatatgatgctttg
aacaacaccccttgtttgctgccatcctggatctcaaaagcttctgcccgtcaaagaaaa
ggtagagctggccgtgtgcaacccggggagtgttatcatctctaccctagatgtgtatat
gatgcatttgcggactatcagcttccagagcttctcaggacacctctgaactccttgtgc
ttgcaaataaagagtttgcagattggtactataggggagttcttgtcagctgcattgcag
cctccagaagcgttagctgtgcaaaatgctgttgagttcctgaagatgattggagcatta
gatgagggggaaaatcttaccaatcttggacgatatctctcaatgcttcctgttgatccg
aagctagggaagatgctcataatgggagctgttttccggtgccttgatcctgttcttaca
gtagtctcggggttaagtgttcgtgacccttttctgttacctcaagacaagaaggatttg
gcagggacagcaaaatcaagattttctgcaaaagattacagcgatcatatggctcttgtc
cgtgcatatgaaggatggaaagatgcagagagggaaggatctggttacgattactgctgg
agaaattttctctctgcccaaacccttcaagctatccattcacttcggaagcaattcaat
tttattttaaaagatgttggtttactagatgcagactccaacacaagtaacagcttgagc
cataatcagtcactggttcgtgctatcatctgctctggcctctttcctgggattgcttct
gtcgtgcacagggagaagtccatgtctttcaaaacaatggacgacgggcaggttctactt
tatgctaactctgttaatgcaaaataccagacgatcccctacccttggttagtatttggt
gagaaagtcaaagtcaatactgtcttcatccgtgattccactggggtatcagattctata
ttgctcctgtttggtggaaatcttcttaagggagaaatggcagggcacctgaagatgttg
aatggttacatcgacttcttcatggatccaagtttggccgaatgctattggaatcttaag
gaggaacttgataagcttgtccagaaaaagcttcaagaccccaacacagacattcacaag
gaaggcaaatacctaatgcttgcaattcaagagttggtcactgctgacttatgcgaagga
agatttgtatttggccgtgaaaccaaaagagccaggctcaccagcggcaacactgacaac
aagagcagaattataaaggatggaatgaatccaaagagtttgcttcagaccttactcatg
agagcgggtcacagtccaccaaagtacaagacgaagcatctaaagaccaacgagttcaga
gctctagcggagttcaaagggatgcaatttgttggaaaaccaaagaagagcaagcaactg
gctgagagggatgcagctattgaagctttaggatggctgacacagacttctgataagagt
cctcaggatgatgaggatgataacccgatagatattactgataacatgctgaagcttctc
aacaagaggcgaccaaagcggcagaggagcaaatga
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