Asparagus officinalis (garden asparagus): 109843909
Help
Entry
109843909 CDS
T05243
Name
(RefSeq) protein RRP6-like 2
KO
K12591
exosome complex exonuclease RRP6 [EC:3.1.13.-]
Organism
aof
Asparagus officinalis (garden asparagus)
Pathway
aof03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
aof00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
109843909
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aof03019
]
109843909
Messenger RNA biogenesis [BR:
aof03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Exosome cofactors
109843909
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
HRDC
PMC2NT
Motif
Other DBs
NCBI-GeneID:
109843909
NCBI-ProteinID:
XP_020268472
LinkDB
All DBs
Position
5:74040861..74056223
Genome browser
AA seq
906 aa
AA seq
DB search
MEEDDPSSTLAHKAQHLQTLISPLSSSTSKLSGKSRTIPSNKDFHFYNSFREFKLPNREI
SAKVQSSLDSLSSSSNLFGEKKQPPLPDDLDDSYDWLVNLNDDFIEKFNISLDEFKRQRE
KEEGKVGNLGLEEGGFQLVNRNKKKKGNLMDEFGKHESLGSSSGIKVGLKDRKAVGGKSK
VPFHIPTIRRPQDEFNILVNNVNKPFEHVWLERSEDGNRVIHPLERLSVEDFIDRSIEEV
EIAKPLPLDSTPFVLVDGLKELKELAAKLRNVNEFAVDLEHNQYRSFQGLTCLMQISTRA
EDFIIDTLKLRVHVGPYLREVFKDPSKRKVMHGADRDVEWLQRDFGIYICNLFDTGQASR
VLQLERNSLEYLLHHFCGVNANKEYQNADWRLRPLPDEMIKYGREDTHYLLYVYDLMRHR
LISASTDEDDLLLEVYKRSYDLCLHLYQKEILTDNSFLYIYGLQEADFNPKQLSIASALH
AWRDKVAREEDESTGYVLPNKALLEIAREMPISTSKLRRLVKSKHSVVERNLSTVTTLIK
NAIEKSSGFESIAEELKNTRLEPNRQKMAEGGTDIEMLAGTEDPVDSTVSHTKDPDVTGN
IKIIQASVDAMDEGAKPTDAEKLWGISDGKPQEKGDVHSISTPNIDRPSKICDTLGTNEG
KMEYDNTGLSQPKKMASIGSVQILKKQTSGFGALLGNSASRKKLNPVIRGIREQDKNVNK
VEQIKSSVVLPFHSFSGSDKISEPSPSETIKQTDPAARQQQNSNQPSPITQLEEIIQLEN
NNDSDEEILTTDQETTEAVEKPISLSDLSSSFQQCFQSISEKNRRPSQENEVRIQVKPFD
YAAARRNIEFGGVEEHFKDAELDNNPSESTEKRKGSDKGRSSGEERVRGLRRQAFPASGN
RSTSYK
NT seq
2721 nt
NT seq
+upstream
nt +downstream
nt
atggaggaagatgatccctcctcaaccttagcccacaaagcccagcacctccaaacccta
atctcccctctctcatcatcaacctcgaagctctcgggcaagtcgaggaccataccgtcc
aacaaagattttcatttctataacagttttcgcgaattcaagctccccaatagagaaatc
tcagcaaaggttcaatcttctcttgattctctgtcctcttcttcgaatctattcggcgag
aaaaagcagccgccgttacccgacgatctcgacgattcctacgactggctggtgaatctc
aacgatgattttattgagaagtttaatatttctcttgacgaatttaagcggcagagggag
aaggaagagggaaaggtgggtaacttagggctggaagaaggtgggtttcagttggttaat
agaaataagaagaaaaaggggaatttgatggatgaatttgggaaacatgagagcttggga
tcttcgtctgggattaaggttggtttgaaggacagaaaggcagtgggtgggaaatcgaag
gtgccatttcatataccaacgattaggcggccgcaggatgagttcaatatattggtgaac
aatgtcaataagccctttgagcatgtttggttggagagaagcgaggacgggaaccgcgtt
attcatccattggagagattatctgtggaggactttattgatagaagtattgaggaggtt
gagatagctaaaccacttcctttggatagcactccatttgtgcttgtggatgggttgaaa
gaattaaaggagctcgctgccaagttgcgaaatgtgaatgaatttgcggttgacttggag
cacaatcagtacagatcgtttcaaggactaacttgtctgatgcaaatttcaacaagagca
gaggacttcataattgacaccctcaagttgcgtgtacatgttggtccatacttgagagaa
gtttttaaagatccttccaagagaaaggtaatgcatggggcagatcgcgacgtagagtgg
cttcaacgagactttggcatatatatctgtaatctttttgacacagggcaggcatcaagg
gtgttgcaattagaaagaaacagtctcgagtatcttttgcatcacttttgtggagtaaat
gcaaataaagaatatcagaatgcagattggagactgcgtccattgcctgatgaaatgatc
aagtatgggagggaagatacacactatttattatatgtatatgatttaatgaggcacaga
ctgatatcagcatccacagatgaagatgaccttctcttagaggtctataagcgcagttat
gatctatgtcttcatctctatcagaaagagatactgacagataactcatttctctatata
tatgggttacaggaagctgattttaacccgaagcagctctctattgcttcagcgttacat
gcgtggcgagacaaagttgctcgtgaggaagatgaaagtactggatatgtattgcctaac
aaagcactacttgagattgcaagggagatgcctatttctacgagtaagctacgccgactg
gtgaagtccaagcattctgttgtggagcgcaacctgagtactgtcactactctaattaaa
aatgcaattgaaaagtcttctggctttgagagcattgctgaagaactgaagaacacacgt
ttggaaccaaacagacaaaaaatggctgaaggtggtacggacattgaaatgttggctggt
acagaggatcctgtggattctacagtttctcatacaaaagatcctgatgttactgggaat
attaaaattattcaagcttctgtggatgctatggacgagggtgcaaaacctacagatgct
gaaaagttatggggtatttcagatggaaaacctcaagaaaaaggggatgtgcattccatc
tcaacgcctaacattgaccgtccatctaaaatatgtgatacacttggaaccaatgaagga
aagatggagtatgataacactggcctctcacaaccaaagaagatggctagtatcggctcg
gttcaaatattgaaaaaacagactagtggttttggagcattgttgggcaattcggcatct
agaaaaaaattgaaccctgttataaggggtattcgtgagcaggacaagaatgtgaacaag
gtagagcagatcaagtcctcagtggtcctccccttccattcattttctggcagcgacaag
atttcagagccgagcccttcagagacaatcaaacaaactgatccagcagctcgacagcaa
caaaattccaatcagccatctcctatcacccaattggaagaaataattcaattagagaac
aacaatgattctgatgaagaaatcctaactactgatcaagaaactacagaagcagtggag
aagcccatttcactatcagatctttcctccagtttccagcagtgttttcaatcaataagt
gaaaagaacaggagaccatctcaagaaaatgaggtaaggattcaggtgaagccttttgac
tatgctgctgctaggagaaatatcgaatttgggggagttgaagaacattttaaggatgct
gaacttgataataatccctcagagtccacagagaaacgaaaaggatctgataagggacga
tctagtggagaagagagagtgagaggactgcgtcgtcaggcttttcctgcatcaggtaat
agaagcacaagttacaaatga
DBGET
integrated database retrieval system
