Asparagus officinalis (garden asparagus): 109844293
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Entry
109844293 CDS
T05243
Name
(RefSeq) uncharacterized protein LOC109844293 isoform X1
KO
K10756
replication factor C subunit 3/5
Organism
aof
Asparagus officinalis (garden asparagus)
Pathway
aof03030
DNA replication
aof03410
Base excision repair
aof03420
Nucleotide excision repair
aof03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
aof00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
109844293
03410 Base excision repair
109844293
03420 Nucleotide excision repair
109844293
03430 Mismatch repair
109844293
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
aof03032
]
109844293
03036 Chromosome and associated proteins [BR:
aof03036
]
109844293
03400 DNA repair and recombination proteins [BR:
aof03400
]
109844293
DNA replication proteins [BR:
aof03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
109844293
DNA Replication Termination Factors
ELG1-RFC complex
109844293
Chromosome and associated proteins [BR:
aof03036
]
Eukaryotic type
Sister chromatid cohesion proteins
CTF18-RFC complex
109844293
DNA repair and recombination proteins [BR:
aof03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
109844293
Check point factors
HRAD17(Rad24)-RFC complex
109844293
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RFC_C
RCF1-5-like_lid
DNA_pol3_delta2
AAA_lid_RFC1
AAA_2
Motif
Other DBs
NCBI-GeneID:
109844293
NCBI-ProteinID:
XP_020268866
LinkDB
All DBs
Position
6:complement(12939090..12946844)
Genome browser
AA seq
848 aa
AA seq
DB search
MLRQNLRPRSIPEKSERFWLISWSLRTKMAPAMGNPSRPNGSSLIRPSSRHKRSGYEPSD
TETEWQESPWHDGLLVSNRSKTPNPARIDNPISNRSQTPDPTRATAPSNRSQRPTSKEDK
DNSANRTSRRSPSDRRRSKSPYKSITQGEDAAAYIGHPGLRRNTSPFKVSEHRNPSPFKG
SLNCDTSPFKASEHGSKHISPYMSRREELYHKNDDLDGSSRKKDHRTPSRRQRSEDKGTH
TQPQVGPNMKESSRKKFQELSRASERSNLHQSRSMSVPKLRTKEREGQVNSGAERRPSPL
AKTIIHEENGGSYGNYTDEDINVKIANMKLSKPPSAGDILNQDTESVSLGDIFVSRDCTN
LHKGSANKGNKSAQRYSTFPESKNVVHQFNRGRGSFNQNRQVVSMSTVLSQANTSSSSAF
DRTFGSKLSESSGKLSGSLKKITAIRQRSQADTWLSCVRRGGSCAKSKSLDSREVDEASF
IERALVVEELRPSWAVKHRPLSLSKFICHKQQAKYLKELISHDNFPHILFKGLSGSGKKS
LITALLHEIFGDSLKTSDDLRHFQVQETTPMQISVPVTSSPHHVELNLKSESKNARYALM
ALVKEITSDHALAPEVSDVSLKADYKVVILHEVDKVADSVQHLIKWIMDRYTEACKIILC
CEDDASILNSVKTRCKFISVDPPVTNEIMEVLIDIAKKENLELSTSFAARIASKSKHNLR
RAIMALEACRAHNYPFNDSQPIPVGWEEVVVEVAEEILADPSTKSLFFIRGKFQKLLVEF
VHPKLILQKLVEQFLKRVEASIKRELYYWHAYYEKRLPVGIGALLKLEEFVAKFMSIYRK
SSSAPQFV
NT seq
2547 nt
NT seq
+upstream
nt +downstream
nt
atgcttcgacaaaaccttaggcctcgatcgattccggagaaaagcgagcgattttggctg
atttcttggtctttgaggactaagatggctcctgcaatgggtaatccctcaagacctaat
ggatcttctttaattcgcccttcatctagacataagagaagtggctacgagccatctgac
accgaaaccgaatggcaggagagcccctggcatgatggattattggtttcaaataggtcg
aagactcctaatcctgccagaattgataacccaatctcaaacaggtctcaaactcctgat
cctaccagagctactgctccctcaaatcgtagccagaggcctacttcaaaggaggacaaa
gacaactctgcaaataggacttcaagaagaagtccttcggacagaaggcgcagcaaatct
ccttataagtcaatcacacaaggtgaagatgctgctgcttatattggccatccgggtcta
aggaggaataccagcccttttaaggtgtcagagcatcgcaatcccagtccatttaagggt
tcattgaattgtgatacaagtccttttaaggcttcagagcatggaagtaagcatatttct
ccatatatgagtagaagagaggagttgtatcataaaaatgatgatcttgatggctcatcc
cggaagaaagaccacagaacaccttctagacgtcaacgctctgaagataaaggaactcat
acacaacctcaagtaggtcctaatatgaaggaaagttctcggaaaaaatttcaagaactt
tctcgagctagtgaaaggtccaacttacatcaaagtaggtcgatgtctgtgccaaaactg
agaacaaaagaaagggaaggtcaggttaattctggtgcagagcggaggccatcaccacta
gctaagactataatccatgaagagaatggtggttcttatggaaattatacagatgaagac
ataaatgttaaaattgctaatatgaagctgtctaaacctccctcagctggtgatatatta
aatcaagatacagagtctgtttcacttggtgatatcttcgtttctcgtgattgtacaaat
ctccacaaaggatctgcaaataaaggaaacaaatctgctcaacggtatagtacatttcca
gaaagtaaaaatgtagtccatcagtttaatagaggtagaggaagttttaatcagaatcgt
caagttgtttcaatgagcactgttctttcacaagcaaatacaagttcaagctctgctttt
gatcgaactttcggcagcaagttaagtgagagcagtggaaaactaagtggaagtttgaaa
aagatcactgctatcagacaaagaagccaagctgatacatggttgtcttgtgtgagaagg
ggtggatcatgtgctaagtcgaagtcactggactctagagaagttgatgaggcatctttt
attgaaagggcacttgttgtggaagaactcagaccatcttgggctgtgaagcacaggcca
ctctcattgagtaaatttatttgtcacaaacaacaagctaaatatctcaaagaattgata
tcccatgacaattttccgcatattctgttcaagggactttcaggctctggaaagaaatca
ttaatcacggcattgctgcatgaaatttttggtgattccttgaaaacatctgatgatctg
agacacttccaggttcaggaaactacgcctatgcaaatttcagttccagtaacttcgagt
cctcatcatgtggagcttaacttgaagtctgaatcaaagaatgctcgatatgctttgatg
gctttagttaaggaaataacaagtgatcatgcgctggcccctgaagtgagtgatgtcagt
ttaaaggcggactataaagtggtcattctccatgaagttgataaagttgctgacagtgtt
cagcacctgataaagtggataatggaccgttatacagaagcatgcaaaatcattctttgt
tgtgaagatgatgcttctatcctcaactctgtgaagactcgctgcaaatttatctctgtg
gatccccctgttacaaatgagatcatggaggtcctgattgatattgccaagaaggaaaac
ttggagctttctacgagttttgctgctagaatcgcttccaagtcaaagcacaatttacga
agagcaattatggctcttgaagcatgcagagcacacaattatcctttcaatgatagtcaa
ccaattccagtgggttgggaggaggttgttgtggaagttgcagaagaaattcttgctgat
ccttccacaaaaagtctgttcttcatacgtgggaagttccaaaagcttttggtggaattt
gtgcatcccaaattgatcctccagaaactcgtggaacagttcctcaagcgagttgaagct
agcattaaacgtgaactttattattggcatgcatattacgagaagagattgcctgttgga
ataggtgccctgctgaagttggaagaatttgttgcaaagttcatgagcatctacaggaaa
agcagctcagccccacagttcgtctag
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