KEGG   Asparagus officinalis (garden asparagus): 109844349
Entry
109844349         CDS       T05243                                 
Name
(RefSeq) U5 small nuclear ribonucleoprotein 40 kDa protein
  KO
K12857  Prp8 binding protein
Organism
aof  Asparagus officinalis (garden asparagus)
Pathway
aof03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:aof00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    109844349
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:aof03041]
    109844349
Spliceosome [BR:aof03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U5 snRNP specific factors
    109844349
 Complex C
   U5 SnRNP specific factors
    109844349
SSDB
Motif
Pfam: WD40 WD40_Prp19 WD40_CDC20-Fz Beta-prop_EML_2 Beta-prop_TEP1_2nd WD40_WDHD1_1st Beta-prop_CAF1B_HIR1 WDR55 EIF3I WD40_MABP1-WDR62_2nd Beta-prop_WDR75_1st Beta-prop_EML Beta-prop_WDR90_POC16_2nd Beta-prop_TEP1_C Beta-prop_EIPR1 NBCH_WD40 Beta-prop_IFT122_1st ANAPC4_WD40 Beta-prop_SPT8 Beta-prop_RIG_2nd WD40_MABP1-WDR62_1st Beta-prop_SCAP WDR90_beta-prop_4th WD40_RFWD3 Beta-prop_DCAF4 Beta-prop_IFT140_1st Beta-prop_WDR19_1st Beta-prop_WDR35_TULP_N eIF2A Beta-prop_HPS5 Beta-prop_WDR75_2nd WD_LRWD1 Beta-prop_DCAF12 Beta-prop_Nup120_160 MIOS_WD40 YdbH-like
Other DBs
NCBI-GeneID: 109844349
NCBI-ProteinID: XP_020268931
LinkDB
Position
6:7167893..7171882
AA seq 340 aa
MLTVPREPNNSLAIAGSNNPIQPLGLNGKTPQRTSSLESPIMLLTGHQSAVYTMKFNPSG
TVIASGSHDKDIFLWHVHGDCKNFAVLRGHKNAVLDLHWTPDGTHIISASPDRTLRAWDV
ESGGKQIKKMAEHSSHVNSCCSSRRGPPLVGSGSDDGTAKIWDLRLRGAIQTLPDKYQIT
AVEFSDAADKIFTGGLDNDVKVWDLRRMNEVVMTLQGHGDMITGMQLSPDGSYLLTNGMD
CTLRIWDMRPYAPQNRCVKIFAGHQHNFEKNLLKCAWAPDGSKVTAGSSDRMVYIWDTTS
RRILYKLPGHNGSVNETAFHPSEPIIGSCSSDKQIYLGEL
NT seq 1023 nt   +upstreamnt  +downstreamnt
atgctcaccgttccaagagaacctaacaattctctagccatcgcgggctcaaacaatccc
atccaaccgttgggcctcaacggcaaaaccccacagcgaacctccagtctcgaatccccc
atcatgctcctcactggccaccagagcgccgtctacaccatgaagttcaacccatccgga
actgtgattgcatctgggtcccatgacaaagacatcttcctttggcatgtccatggcgac
tgcaagaacttcgctgtcctccgtggccacaagaacgctgtcctcgacctccactggact
cccgatggcacccacataatttctgcaagccccgacagaacgcttcgagcttgggatgtt
gagtctggaggcaaacaaatcaagaagatggccgagcactcatcacacgttaactcctgc
tgctcgtctcgccggggcccaccgctcgtcggtagcggctctgatgacggcactgcaaag
atttgggatttgagacttcgcggagcgattcagactctacctgataagtatcagataact
gctgtagaattctctgatgctgctgataaaattttcactggagggctcgataatgatgtg
aaggtttgggatcttcgaaggatgaatgaagtggttatgactcttcaaggacatggagat
atgatcacagggatgcagctgagccccgatggatcttatctgttgactaatggaatggat
tgcacgctgaggatttgggatatgaggccatatgctcctcaaaaccgttgtgttaagatt
tttgctggtcaccaacataatttcgagaaaaatttgctgaagtgtgcttgggctcctgat
ggaagtaaggtgaccgctggaagctcagatcgaatggtttatatctgggatacaacgtcg
aggaggattttgtataagttaccagggcataatggatcggtgaatgagactgcttttcat
ccgagcgagcctatcattggttcttgtagcagtgataagcagatttaccttggagagctc
tag

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