Asparagus officinalis (garden asparagus): 109844349
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Entry
109844349 CDS
T05243
Name
(RefSeq) U5 small nuclear ribonucleoprotein 40 kDa protein
KO
K12857
Prp8 binding protein
Organism
aof
Asparagus officinalis (garden asparagus)
Pathway
aof03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
aof00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
109844349
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
aof03041
]
109844349
Spliceosome [BR:
aof03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
109844349
Complex C
U5 SnRNP specific factors
109844349
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Gene cluster
GFIT
Motif
Pfam:
WD40
NBCH_WD40
ANAPC4_WD40
eIF2A
MIOS_WD40
Motif
Other DBs
NCBI-GeneID:
109844349
NCBI-ProteinID:
XP_020268931
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All DBs
Position
6:7167893..7171882
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AA seq
340 aa
AA seq
DB search
MLTVPREPNNSLAIAGSNNPIQPLGLNGKTPQRTSSLESPIMLLTGHQSAVYTMKFNPSG
TVIASGSHDKDIFLWHVHGDCKNFAVLRGHKNAVLDLHWTPDGTHIISASPDRTLRAWDV
ESGGKQIKKMAEHSSHVNSCCSSRRGPPLVGSGSDDGTAKIWDLRLRGAIQTLPDKYQIT
AVEFSDAADKIFTGGLDNDVKVWDLRRMNEVVMTLQGHGDMITGMQLSPDGSYLLTNGMD
CTLRIWDMRPYAPQNRCVKIFAGHQHNFEKNLLKCAWAPDGSKVTAGSSDRMVYIWDTTS
RRILYKLPGHNGSVNETAFHPSEPIIGSCSSDKQIYLGEL
NT seq
1023 nt
NT seq
+upstream
nt +downstream
nt
atgctcaccgttccaagagaacctaacaattctctagccatcgcgggctcaaacaatccc
atccaaccgttgggcctcaacggcaaaaccccacagcgaacctccagtctcgaatccccc
atcatgctcctcactggccaccagagcgccgtctacaccatgaagttcaacccatccgga
actgtgattgcatctgggtcccatgacaaagacatcttcctttggcatgtccatggcgac
tgcaagaacttcgctgtcctccgtggccacaagaacgctgtcctcgacctccactggact
cccgatggcacccacataatttctgcaagccccgacagaacgcttcgagcttgggatgtt
gagtctggaggcaaacaaatcaagaagatggccgagcactcatcacacgttaactcctgc
tgctcgtctcgccggggcccaccgctcgtcggtagcggctctgatgacggcactgcaaag
atttgggatttgagacttcgcggagcgattcagactctacctgataagtatcagataact
gctgtagaattctctgatgctgctgataaaattttcactggagggctcgataatgatgtg
aaggtttgggatcttcgaaggatgaatgaagtggttatgactcttcaaggacatggagat
atgatcacagggatgcagctgagccccgatggatcttatctgttgactaatggaatggat
tgcacgctgaggatttgggatatgaggccatatgctcctcaaaaccgttgtgttaagatt
tttgctggtcaccaacataatttcgagaaaaatttgctgaagtgtgcttgggctcctgat
ggaagtaaggtgaccgctggaagctcagatcgaatggtttatatctgggatacaacgtcg
aggaggattttgtataagttaccagggcataatggatcggtgaatgagactgcttttcat
ccgagcgagcctatcattggttcttgtagcagtgataagcagatttaccttggagagctc
tag
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