Asparagus officinalis (garden asparagus): 109844373
Help
Entry
109844373 CDS
T05243
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH10
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
aof
Asparagus officinalis (garden asparagus)
Pathway
aof03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
aof00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
109844373
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
aof03041
]
109844373
Enzymes [BR:
aof01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
109844373
Spliceosome [BR:
aof03041
]
Complex C
Other components
Step II factors
109844373
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
WHD_HA2
DEAD
AAA_19
AAA_22
nSTAND_NTPase5
nSTAND3
FtsK_SpoIIIE
AAA_24
ABC_tran
DAP3
ATPase
Motif
Other DBs
NCBI-GeneID:
109844373
NCBI-ProteinID:
XP_020268965
LinkDB
All DBs
Position
6:5195945..5207815
Genome browser
AA seq
719 aa
AA seq
DB search
MPLLPSNAQAQNQNKGGNFTSGDHRTQNLLARKQWIAQQRKSLPIAAVEKRLVDEVRKND
TLIIVGETGSGKTTQLPQFLCNSGFCHDGLLIGITQPRRVAAVTVAKRVAEECNVELGQK
VGYAIRFEDVTSSSTRIKYMTDGLLVREALLDPFLSNYSTIVVDEAHERTVHTDVLLGLL
KKVQHERSLIIVKRQNPCHTAAKKLIMPDKEDKTQSINNLKPYQNAKLTPLKLIIMSASL
DARGFSEYFDGAKAVHIQGRQYPVDVLYTYHPEPDYLDATLITIFQIHLGEGPGDILAFL
TGQEEIESVERLVHERARQLPEGSQKILTAPIYSSLPSEQQMNVFKPAPSGSRKVILATN
IAETSVTIPGIKYVIDPGLVKARSYNPVTGMESLIIIPTSKAQALQRSGRAGREGPGKCF
RLYPESEFGKLMDSTVPEIKRCNLSNVVLQLKALGIKDIFSFDFMEKPSRTGIVKSMEQL
YLLGALTDSGELSDPVGLQMARLPLDPIYSKALIIAHEFKCLEEMLIVVAMLSVESIFHF
PREKIEEATAAKKSFSSTEGDHITLVNVYRASAECLEKSKAANSKEKTMEKSLNKWCRDN
FINSRSLRHARDVHRQIKGHMQQMGLSISSCGDDMVQFRRCLTASFFLNAALKQPDGSYR
ALLSGQNVQIHPSSVLRAKKPDCIIFNELIRTSQNYVRNVTRIDPLWLPELAPQSFAED
NT seq
2160 nt
NT seq
+upstream
nt +downstream
nt
atgccgctactcccaagcaacgctcaggctcaaaatcagaataaaggtggcaactttact
tccggtgatcatagaacccaaaatttacttgccaggaagcagtggattgcacagcagagg
aagtctttgcccattgcagcagttgagaaaaggctcgtggacgaagtgaggaagaatgat
actttgataattgttggtgaaacaggaagcggaaaaaccacacaactgccacagtttcta
tgcaattctggattttgtcatgacgggttgctcattggtatcactcaaccccggagagtt
gcggctgttactgttgcaaaacgagttgcagaagagtgtaatgtagagttaggccagaag
gttggatatgctatcagattcgaagatgtaacttctagctccacaaggatcaagtacatg
accgatggtttgctagtaagggaggcattgctggatccatttctgtcgaattatagtacg
atagttgttgatgaagctcatgaaagaacagttcacacagatgttttgctagggttgttg
aagaaagtacaacatgaaagatcactaattattgttaagaggcaaaatccttgtcatacg
gctgctaaaaagctaatcatgcctgataaagaagacaagactcaaagcatcaacaatttg
aagccgtatcagaatgcaaaacttacaccgttaaagttgattataatgtctgctagcctt
gatgcaaggggtttctctgagtactttgatggtgccaaagctgttcatattcaaggaaga
caatatcctgtagatgtactatatacatatcatcctgagccagattatctggatgccact
cttattactatttttcagatccatttaggggagggtcctggagatatacttgcttttctt
acaggacaagaggagattgagtctgttgagagactggttcatgagcgtgctcgccagtta
cctgagggtagtcagaaaattctgactgcccctatatactcctcacttccctcggaacaa
cagatgaatgtgtttaagccagccccatctggcagccgcaaggtcatactagcaacaaat
attgctgagacttcagtgacaattcctggtatcaagtacgttatagatcctggattggtg
aaagctcgttcttacaacccagttacgggaatggaatcattaattatcatcccaacctca
aaagcacaggctcttcaaaggagtggacgggctggacgtgaggggcctgggaagtgcttt
cggctgtacccagaaagtgagtttggcaaacttatggattccactgttcctgaaattaag
agatgcaacctatcaaacgttgtattacagctcaaagcacttgggattaaggacatcttc
tcctttgatttcatggaaaagccttcaaggactggcattgttaaatctatggagcagttg
tacttactaggggctctaactgacagcggcgagttgtcagatccagtcgggcttcaaatg
gctcggctgcccttagaccccatatattcgaaagctctcatcattgctcacgaatttaaa
tgcttggaagaaatgctaatagtagttgctatgctctcagtggaatctatttttcacttc
cctcgtgaaaagattgaagaggcaacagcagcaaagaagagcttttcaagtactgaaggg
gaccatataaccttggtgaacgtgtatcgggcttctgcagaatgcctggagaagagtaaa
gctgcaaatagcaaggagaaaacgatggagaaaagcctcaataaatggtgtagggataac
ttcatcaatagtcggtctcttaggcatgcacgagatgttcacaggcaaattaaaggccat
atgcagcagatgggtctatcaatatcatcatgtggtgatgacatggttcagtttcggagg
tgccttaccgcctcttttttcctgaacgcagcactgaagcaaccagatggatcatacagg
gctttattgagtggtcagaatgttcaaatccatccctcatcagtgttgcgggcaaaaaaa
ccagactgcataatcttcaatgagctgattcgaactagtcaaaactatgtccgcaatgta
acaagaattgatccgctgtggttacctgaattggcccctcaaagttttgcagaagattga
DBGET
integrated database retrieval system
