Asparagus officinalis (garden asparagus): 109844394
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Entry
109844394 CDS
T05243
Name
(RefSeq) protein RST1 isoform X1
KO
K27498
focadhesin
Organism
aof
Asparagus officinalis (garden asparagus)
Brite
KEGG Orthology (KO) [BR:
aof00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aof03019
]
109844394
Messenger RNA biogenesis [BR:
aof03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
109844394
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3730
Motif
Other DBs
NCBI-GeneID:
109844394
NCBI-ProteinID:
XP_020268989
LinkDB
All DBs
Position
6:11153894..11182940
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AA seq
1838 aa
AA seq
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MSNSSPYSSLLSKLRLPQPQLSRQAVTYLFKTLTPNLSSAAARDAISQCLRELCRLFSLG
LVDRSVALLEIQSALEGCDARFVGVLVKGLGFLCRFGFGTDGEWRMRRFDTVELHPFVKV
LACREEVQAELIQQVLLFIAHNRTVGMEAVTWFLRPFLMFSVIHKPSQSSSSFARDLISA
VASLCCSFPSEAISIIKLLTECLRFFPCTNVMEFKHLINSAEYVVDAYVGVLNEIVGAKE
QQSTSTIQVCGVEIVDALLSLSGCTHRPYGDVEFMVEQSKRLLIAQKELGLLHLPEFAMI
MVSIPLILAQLEFEHEYLSILKLLIFIFEWRAETERNSKGTACCLCEELLYIFPAVSLLS
SPSKSVKAAAACLLSTVDRLVSDLLNVPRMTVVSNHKFLCVNKPKSIHFRLLNHLWLQEQ
SHFPHSTYLGLACGVVYEFDKTSSEPNYWTCQLRMYLQTAEKLKDASFSQSSEDLVAGLI
RTYFLLSSIASVLLMHPMLGSSAVDVLATIGLVDSRLCISLLQALLYYNKMLCSHGSNSP
ELLLRLFEMLPSLAAHSVMVPLILQTVLPMLQKGVKPVLYAAATRLLCKTWITTGQAFGT
LQEILDPKALSDFISDRHICISIAGSIRDVCRHNPDRGVDLILSVSSCIESRDSTVRALG
FESLAHLCEADVVDFYTAWDVIARYSIDYSNDPIVAHGLCTLLRWGAMDVAAYPESSKTV
TKILWDVAISKNRHSASSWVKARASAFKALSQYEVEYLQDTFPDFRQTNLRCLVDEDDTK
VLMAMEELEIKIINFDHLNRRRVHTQKRAMVNKVEKLLDVLPQVIFSQGSYRLDARPGAA
LLSLVFTPKDLQGKSKALAKIHSAYEKALLEISESLHVSRNIIFALLALQSWKTFICRWI
REVIMHDDSKGSRDVSDKHSKAAHDIFKILCKAAAEAIPRVAVNIALAIGALCTVVPSTT
HSVTSAASDLLLKWLVEHEHEHQQWSAAISLGLVYNCLHATDRAHKSRIITELLKAVNNC
KSYLVKGACGVGLGFACQDLLTRIEVDNPSPEGSTARLAETMLLHKTIRTLSTALSQICP
SASDSLSTLCENFLTGREDPLSADFLDLPHGNINNVEEDAWGIAGLVLGIGNSVVAIYRS
GAYDAVLKIKEMLISWVPQVDSSAQGSVFCREMTEVPLAMGSCLVLPTVMAFCQRTELID
NDSDLIYRYGSLLSALRCSKKSGTLYQNLMMASCVGAGSFVSCILSDGTQSMRFGEVKCL
LEMFRDAYTNLSPPYVQFGGMLGVVNVFGAGAGDLTHVYAKTPFQHNIKDSTFIMGSLLS
SPICESLSTSTIQELFLLAKESKDQQIKEYSAWAVSFLREKCWSKELQNINPQGSVNDTA
LPSQNFAEDSLVFKLCLWLRDTDFNKPDKVLRATTVSSILKCLSKAPRLPALDWGSIIRS
CMQYGAKCSLGTEQSAKLLREECICFSLTHANGVSSLLVFVDELTDLSRFRTLELNLQCT
LLHHLPDLLKIFSGSKLDKLSEELVAYFSSSGGLYLNFDLDQRTLLRVSFWKGLRKCLDG
KFKESLYTPNIEKCMECLFTILPVLIYDAKPEAWVAVAMEEWSEAIKCLSKASQDWLMDI
LQVPDIDKIHGGILVDEVAKRISARARLVRVGCIPNSELHKIKAYLLNTSLEGAWWTALM
DVAAAVSTAEGNTKVHWLLNALEISCMAEYPSTALRFVGLLSGICCKYMPLLIVDQDTVL
SDLPTTLPCLLAETSWRRVAEPAADKLWISTERICVWAAHLAGNEDSLTSKGGIRDDEAL
KSTLARSVYETCVALRDYLPVQKQLRLVNLQVSQLWKS
NT seq
5517 nt
NT seq
+upstream
nt +downstream
nt
atgtccaactcctccccctactcctctctcctctccaaacttcgcctcccccaaccccaa
ctctcccgccaagcagtgacctaccttttcaaaaccctaacccccaacctctcctccgct
gccgctcgcgacgccatctcccaatgcctgcgcgagctctgccgcctcttcagtctaggg
ctcgtcgatcgctctgtcgcgcttttggagatccagtcggcgctggaggggtgcgatgcg
aggttcgtcggggttctagtgaaggggctagggtttttgtgtcggtttgggtttgggacg
gatggagagtggaggatgaggaggtttgatacggtggagctccatccttttgttaaggta
cttgcctgtagggaggaggtgcaggctgaacttatccagcaagtgctattgtttattgct
cacaacaggactgttggaatggaggctgttacatggttcttgaggccatttttaatgttc
tcagtaatccacaagccttctcaatcatcttcatcatttgcaagggacttgatatcggca
gttgcgtctttgtgttgttcttttccatctgaagctatcagcattatcaagcttcttact
gaatgtcttagattctttccctgcacaaatgtgatggaattcaagcaccttattaattct
gctgaatatgtggtggatgcttatgtgggggtcttgaatgaaattgttggtgccaaggag
cagcaatcgacgagtactattcaagtatgtggtgtagagattgtggatgctctcctttca
ctgagtggatgtactcacagaccttatggtgatgttgagttcatggttgaacagtctaag
cgtttgttgatagctcagaaggagcttggcttgctccatctaccagagtttgccatgatt
atggtctctattcctctcattctcgcccagttggagtttgaacatgagtacttgtctatt
ctgaagcttttgattttcatatttgagtggagggctgaaactgagcgtaactcaaaagga
acagcatgctgcctgtgtgaggagcttttgtatatcttccctgctgtcagccttttgtca
tctccttctaaatctgttaaagcggctgctgcttgtttgctatcaactgtagatagactt
gtttcagacttgttgaacgttcccaggatgacagtggtttctaaccataaatttctgtgt
gttaataagccaaaatctattcattttaggcttctgaatcatctttggctccaggagcaa
tctcattttccacattccacttacctgggacttgcgtgcggtgttgtctatgagtttgat
aagacttctagtgaaccaaactactggacttgtcaactaagaatgtacttacaaactgct
gaaaagttgaaagatgcatcattcagccaatcatcagaagatctggttgcaggtttaatc
agaacatattttttactcagttcgattgcatctgttttacttatgcatcctatgctcgga
tcctctgctgttgatgtattggctacgattggtttagttgactccagattgtgtatatct
ttgttgcaagcacttctttactataataaaatgctatgcagccatggaagtaactcacct
gaattattgctcagactgtttgaaatgcttccatcactagcagcacattctgttatggtt
ccacttattttacagacagtgttgcctatgctccaaaagggtgtaaaaccagtgttatat
gctgcagctactcgtttgctttgtaagacatggattactacaggtcaggcgtttggaaca
ttgcaagaaatcttggatccgaaagcgctgtctgacttcatctctgatagacatatttgt
attagtattgctggttcaatacgcgatgtctgcagacacaatcctgataggggtgttgac
ctcatattatctgtgtcgtcatgtattgagagtcgagattctactgtgcgagctcttggt
tttgaaagccttgcccatctctgtgaagcagatgtagttgatttttacactgcttgggat
gttattgcaagatattcgatagattactctaatgaccctatcgttgctcatggcttatgc
actctactaagatggggcgcgatggatgtggcagcttatccagaaagctcgaagactgtt
acaaaaattttatgggatgtcgcaatatctaaaaataggcattctgcttcatcttgggtg
aaagcacgtgcgtctgccttcaaggccttgtcccagtatgaggtagagtatcttcaggac
acatttcctgatttcaggcaaaccaatttgcggtgtcttgttgatgaagatgatacaaaa
gtactcatggcaatggaggaactcgaaatcaagattatcaactttgaccacctaaatagg
cgtagagttcatacacagaaaagagccatggtgaacaaggttgaaaaattactggatgtc
cttcctcaagttatcttttctcaagggagctacagacttgatgctagacctggggcagcc
ttgttgtctcttgtatttactcctaaagacttgcagggaaaatcaaaggccttggctaaa
atccattctgcatatgaaaaggcactactggaaatttctgaatctcttcatgtatcaaga
aatattatatttgcccttcttgcattgcaatcatggaagacattcatttgccgatggata
agggaagtgatcatgcatgatgattctaagggatcacgtgatgtatcagataaacactcc
aaggctgcccatgacatctttaagatcttgtgcaaggctgcagcggaagctattccacga
gttgctgtgaatattgctttagcaataggtgcactttgcacggtcgtaccttcaacaacc
cattcagttacctctgctgcatcagacttacttctgaaatggttggttgagcatgaacac
gaacatcagcagtggtcagctgctatctcattgggactggtttacaactgtttgcatgca
actgacagagcacataaatctcgaattattactgaacttcttaaggcagtcaataactgc
aaaagctatcttgttaaaggagcctgtggagtgggattgggatttgcttgtcaagatctt
ctcaccaggatagaagtggataatcccagtcctgaaggaagtactgccaggttagcggaa
acgatgttgcttcacaaaacaattagaactttgtcaacagcattgagccagatttgtccc
tctgcatctgattccctgagtactctctgtgagaattttttaacaggtcgagaagatcca
ttaagtgcagattttctcgacttgcctcatggaaacattaataacgtggaggaagatgcg
tggggtattgcaggacttgtccttggtataggaaattctgttgttgcaatatacaggtct
ggagcatatgatgctgtactcaaaataaaagaaatgcttatttcatgggttcctcaggtt
gattcgtctgctcaaggttccgtcttttgtagagaaatgactgaggtacccttagcaatg
ggctcatgtcttgtactacccactgttatggcattttgccagagaactgaactcattgac
aatgactctgatctcatctatcgttatggttcactactttctgctcttcgatgttcgaag
aaatctggaactttgtatcagaatttaatgatggcatcttgtgttggagctggatccttt
gtctcatgcatcttgagtgatggaacacaatctatgagattcggtgaggtaaaatgtctg
ctggaaatgtttagagatgcatacactaacttgtcccctccttatgtccagttcgggggg
atgcttggtgtggttaatgtatttggcgctggtgctggtgatcttactcatgtatatgct
aagacgcctttccagcataatattaaggattcaacctttatcatgggctcattactttca
agccctatctgtgagtccctttcaacatcaaccattcaggaactttttctgctggcaaag
gaatctaaagatcagcagataaaagagtactcagcatgggctgtttcatttctcagagaa
aaatgttggtcaaaggagcttcagaatattaacccacaaggtagtgttaatgatactgct
ttgccatctcaaaattttgctgaggacagcttagtttttaaactgtgcctgtggctcagg
gatactgattttaataagccggataaggtcttacgtgcaactacagtttcaagcatttta
aagtgcctttcaaaagctccaaggttgcctgctttagattggggatccattatcagaagc
tgcatgcaatatggagccaaatgttctcttggtacagagcagtctgccaaattgcttcga
gaggaatgtatatgtttttctttgactcatgcaaatggtgtcagttccctcctcgtcttt
gtggatgagctcactgacctatccaggttcaggactctggagctgaatttgcaatgtaca
ttgttacaccatttaccggacctacttaagatattttctggttcaaagctggataaactc
tcagaagagttagttgcatacttcagttcctcaggtggtttgtacttgaattttgaccta
gatcagagaaccttattgcgagtttcattctggaaaggtctacgtaaatgcctcgatgga
aagtttaaagagtcgctttatacaccaaatatagaaaaatgcatggagtgtttgttcacc
attttacctgtgttgatatatgatgccaaaccagaagcatgggtggctgttgctatggag
gagtggtcagaggctataaaatgcctctctaaggcttcacaggattggctgatggacatt
ctgcaggttccggatattgataagatccatggaggaatccttgtcgatgaagtagcaaag
agaatttcagccagagcaaggctggttagggttggttgcattcccaactctgagcttcat
aagataaaagcttacttattgaatacaagtttagaaggtgcctggtggactgctctcatg
gatgttgctgctgccgtctccactgcagaaggaaacaccaaagttcactggcttcttaat
gcattagagatcagttgcatggcagaatatccttctacggcactgcgatttgtagggcta
ctatctggtatctgttgcaaatacatgccacttcttatagtcgatcaagatacagttttg
agtgatttgcccaccactctgccttgtctccttgctgagacaagctggagacgtgtagca
gaacctgcagcagacaaactatggatatcaacagagcgtatctgcgtgtgggcagcacat
ctagctggtaatgaggacagtttaactagcaaaggtggcatcagagatgatgaagctctc
aagtctactttggctcgctcagtttatgagacctgcgttgctttgagagattatctccct
gtacagaagcagttgaggcttgtgaatcttcaagtttcacaattgtggaaatcctag
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integrated database retrieval system
