Asparagus officinalis (garden asparagus): 109844463
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Entry
109844463 CDS
T05243
Name
(RefSeq) regulator of nonsense transcripts UPF2
KO
K14327
regulator of nonsense transcripts 2
Organism
aof
Asparagus officinalis (garden asparagus)
Pathway
aof03013
Nucleocytoplasmic transport
aof03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
aof00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
109844463
03015 mRNA surveillance pathway
109844463
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aof03019
]
109844463
Messenger RNA biogenesis [BR:
aof03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
109844463
mRNA cycle factors
P-body specific factors
109844463
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MIF4G
Upf2
Motif
Other DBs
NCBI-GeneID:
109844463
NCBI-ProteinID:
XP_020269104
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Position
6:complement(5668012..5681077)
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AA seq
1199 aa
AA seq
DB search
MEHPEDERVSGEQHGKQDNEENVARLEEYKRSIEMKLSLRHDNLNPERPDSGFLRTLDSS
IKKNTAVIKKLKQINDEQREGLMDELRSVNLSKFVSEAVAAICDAKLKTSDIQAAVQVCS
LLHQRYKEFSPCLVQGLLKVFFPGKCAEEPEADKSLKAMKKRSTLKLLIELYFVGVIEDA
GIFVNIVKDLTSLEHLKDRESTQTNLSILASFARQGRIFLGLHQPGQEVNDEFFRGLNVT
ADQKKIFKKAFHSYYDAVAELLQSEHSSLRLMELENAKILNARGELNDENLTSYEKLRKS
YDHLFRGVSSLAEALDLQPPVMPDDGHTTRVTSGADVPSASGKESSVPEPIWDDDDTKAF
YEFLPDLRAFVPAVLLGEAEPKLHDQPPKTQEESAPEPQDTEVHGIASSAADTELSTEGK
AEEKAKDKEEKEKEKGKDSDKEKQKEKEKDTEKKGESEKEKGKPLDGTSLDALLQRLPGC
VSRDLIDQLTVEFCYLNSKANRKKLVRALFNVPRTSLELLPYYSRLVATLSTCMKDIPTL
LLSMLEEEFNFLINKKDQTNIETKIKNIRFIGELCKFKIAPAGLVFSCLKACLDDFNHHN
IDVACNLLETCGRFLYRSPETTIRMGNMLEILMRLKNVKNLDPRHSTLVENAYYLCKPPE
RSARISKTRPPLHQYIRKLLFSDLDKSSVEHVLRQLRKLPWSECEPYLLKCFLKVHKGKY
SHVHLIAFLTAGLSRYHDEFAVAVVDEVLEEIRVGLELNDYSMQQRRIAHMRFLGELYNY
EHIIDSSVIFETLYLIIFYGHGTPEQDALDPPEDCFRIRMIITLLQTCGHYFDRGSSKRK
LDRFLIYFQRYVLSKGALPLDVEFDIQDMFAELRPNMTRCLSIEEVNAALIELEEHEHTA
SRDKASSDKHSDSESQKLSSKKANGTSAENGLVVVEENGKGGHDEAINSESYSDTGSIID
PEMHEDEDELLSDDKSNSGSDGDDEDDSVPAAGSDEDENVQVHRKNAVEVVDPREEEDFD
RELRALLQESLDSRKLELRARPTLNMMIPMNIFEGSTKDTRAMEGESGEETMDDEGSGSG
GGSTKVRVKVLVKKGSKQQTKQMYIPKECSLIQSTKQKEAEELEEKQSIKRRILEYNERE
EEESNGISSASGWLQTGGGANGGQWAVEIGREQGGGDIGSSVIIPLVDFITDIMGGGDK
NT seq
3600 nt
NT seq
+upstream
nt +downstream
nt
atggagcatccagaggatgaacgtgtatctggggagcaacatggtaaacaagataatgag
gaaaatgttgctcgtcttgaggaatataaaagatctattgagatgaagctctctctacgg
catgacaatctgaatcctgaaaggcctgattctggttttctcagaacactagattccagt
atcaagaaaaatacggctgtcattaagaagcttaagcaaataaatgatgaacaaagggaa
gggttgatggatgaattacgaagcgttaacttaagcaagtttgttagtgaagccgtagca
gccatatgtgatgctaagcttaaaacttcagacattcaagctgctgtgcaggtgtgctct
ttgcttcatcagaggtacaaagagttctccccatgccttgtgcagggcctcttgaaagtt
ttcttccctggaaaatgtgctgaagagcctgaggcagataaaagtttgaaggcaatgaag
aaaagaagcactttgaaacttcttattgaactttattttgtaggagttattgaggatgcg
ggcatatttgtaaatattgtcaaggatcttaccagcttggaacatttaaaagaccgtgaa
tcaacacagacaaacttgtcgattcttgccagctttgctcgacaaggcagaattttctta
ggacttcatcagcctggacaagaagtaaatgatgagttcttcagaggccttaacgtcaca
gctgatcagaaaaagatattcaagaaagcattccactcatattatgatgctgttgctgaa
ctccttcaatctgagcattcttctctccgattgatggaacttgaaaatgcaaagatatta
aatgctcgaggggagctcaatgatgagaatttgacttcatatgaaaagctgcgcaagtcg
tatgaccatttatttcgtggagtatcttctctagcagaggcccttgatttgcaacctcct
gtaatgccagatgacgggcatacaacaagggttacctcaggagctgatgttccatctgct
tctggaaaggaatcttcagttcctgaacctatatgggatgatgatgatacaaaagctttc
tatgagtttttacctgatctcagagcgtttgttcctgctgtgttactgggggaagcagaa
ccaaaactccatgatcaacctccaaagacccaagaagaatctgctccggaaccacaagac
acggaagtgcatggcattgcaagttctgctgccgacacagaattgtcaacagaggggaaa
gcagaggaaaaagcaaaggataaggaggagaaagagaaggagaaaggcaaagactctgac
aaagaaaaacaaaaagagaaagagaaagatactgagaaaaagggagaaagtgagaaggag
aaaggtaaaccattggatgggactagcttggatgctctgctgcagaggcttccaggctgc
gtaagccgtgaccttatagatcagttgacggtagaattctgctacctgaactcaaaagcg
aatcgaaagaagctagtgcgagccttgtttaatgtcccaagaacttcattggagttgttg
ccctactattctcgtttggttgctacattgtcgacatgcatgaaagatattccaacatta
cttttgtcaatgcttgaagaggaatttaactttttgatcaataaaaaggatcaaacaaac
attgaaacaaagataaagaacatcagatttattggagagctatgcaaattcaagattgcg
cctgcaggtcttgtttttagttgcctaaaggcctgtttggatgactttaatcatcacaac
attgacgtagcttgcaaccttcttgagacatgcggacgatttctataccgttcacctgaa
acaacaattcgcatgggaaatatgctagaaatactgatgcgtttgaaaaatgtcaaaaat
ttggatccacgtcatagtactttggtagaaaatgcgtactacttgtgcaaaccgcctgaa
cgatctgctaggatttcaaaaactcgtcctcccctgcatcagtatatcagaaagttgctt
ttctcagatcttgataagtcctcagttgagcacgtccttaggcaactaagaaaattacct
tggagtgaatgtgaaccgtacttgttgaagtgttttctaaaggttcacaagggcaaatac
agtcatgtgcatctgattgcttttctcactgcaggccttagtaggtaccatgacgaattt
gcagtagcagttgtggacgaggttctggaagagattagggtgggactggaattgaatgat
tacagtatgcaacagagacgcattgctcatatgcggttcttaggagaattatacaactat
gagcatattattgattcatctgtgatatttgagacattgtatttgataatcttttatggc
catggaacaccagaacaagatgcactggatccaccagaagattgctttcggatcagaatg
attataacacttcttcagacatgtggacactactttgacagaggttcttcaaaaagaaag
cttgacaggttcttgatatattttcagagatacgtgcttagcaaaggtgcattaccactt
gatgttgagtttgacattcaggacatgtttgctgaattgagaccaaacatgacccgctgc
ttatccatcgaggaagttaatgcagcactaatagagctcgaggaacatgagcacacagct
tcaagagacaaggctagtagtgacaaacactccgatagtgaatctcagaagctctcatct
aaaaaagcaaatggaacaagtgcagaaaatggattagtagtagttgaggagaatgggaag
ggtggccatgatgaggcaattaatagtgagagctactccgacactggaagcatcatcgat
cctgagatgcatgaggatgaggatgagcttctttctgatgacaaatccaacagtggatcc
gatggcgacgacgaggatgatagtgtgcctgctgctggctctgacgaggacgaaaatgtc
caggtccaccgtaagaatgcagttgaagttgttgatcctagagaggaagaagactttgat
cgtgagctccgtgcattattgcaggagagcctagactctcgaaagcttgagttacgagct
cgccctactctcaatatgatgatccctatgaatatattcgaggggtccaccaaggataca
agagctatggaaggggaaagtggagaagaaacaatggacgatgaaggaagcggaagcgga
ggaggaagcacaaaggtgagagttaaggtattagtgaagaaagggagcaagcagcagacg
aagcagatgtacataccaaaagagtgttcattgattcagagcacgaagcagaaagaggca
gaagagttggaggagaagcagagtattaaaaggaggattttggagtataacgagagggag
gaggaggaatcgaatgggatttcgtccgcgagcggttggttgcaaactgggggtggtgct
aatggcggccagtgggccgtggaaattgggagggagcagggagggggggacatcggcagc
agcgttatcattcctctggtggattttatcacggatattatgggaggaggagataaataa
DBGET
integrated database retrieval system
