Asparagus officinalis (garden asparagus): 109844492
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Entry
109844492 CDS
T05243
Name
(RefSeq) zinc finger CCCH domain-containing protein 45
KO
K14404
cleavage and polyadenylation specificity factor subunit 4
Organism
aof
Asparagus officinalis (garden asparagus)
Pathway
aof03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
aof00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
109844492
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
aof03021
]
109844492
03019 Messenger RNA biogenesis [BR:
aof03019
]
109844492
Transcription machinery [BR:
aof03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
109844492
Messenger RNA biogenesis [BR:
aof03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
109844492
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
YTH
zf-CCCH
zf_CCCH_4
Motif
Other DBs
NCBI-GeneID:
109844492
NCBI-ProteinID:
XP_020269136
LinkDB
All DBs
Position
6:complement(338198..347768)
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AA seq
603 aa
AA seq
DB search
MKADACGFLHQYDKARMPVCRFFRLYGECREQDCVYKHTNDDIKECNMYKLGFCPNGPDC
RYRHVKQPGPPPTVEEVFQKIQHLSSFNYGSGNRFFQHKNTGYNQQAERPQFPQGPAVAN
QPTAVRPPTTVEPPSMQQQQPQTQQSQPQHVRENQVQSVPNGSSNLANRAASPLPQGQSR
YFIVKSCNRENLEISVQQGVWATQRSNEAKLNEAFESTENVILIFSVNRTRHFQGCAKMT
SKIGGFIGGGNWKYAHGTAHYGRNFSVKWLKLCELSFNKTHHLRNPYNDNLPVKISRDCQ
ELEPFIGEQLASMLYLEPDSQLMEMLIAAESKREEEKAKGVSNDDASDNPDIVLFEDNEE
EEEEEESEEEEDSIGQGGAQGRGRGRGGMMWQGHMPMARGGRPFLRGFPPVMMGGDGFGY
PDSFGTPDMFGVPPRGMMFGGYGPRFGGGDFGGGGMMFPGRPPQPGPVFPMGMGGMMMGN
ANRPPFMGGMPGGMGRPGRPSQLSPFLHPQPPPLPNNNNNRIVKKEQSRTANDSRYEVAT
EGGGGDKFVGSRSSLQNEESESEDEAAPRRSRYGEGSKKKRWESEAEAGSEQWETPGPEP
QNQ
NT seq
1812 nt
NT seq
+upstream
nt +downstream
nt
atgaaagcagacgcttgtgggttcctccaccagtacgacaaggcgaggatgcccgtgtgt
cggttctttcggctgtatggggagtgcagggagcaggactgtgtttataagcacactaat
gacgatatcaaagagtgcaacatgtacaaattgggtttttgcccaaatgggcctgactgt
cgttataggcatgtaaaacagcctggaccacctcccactgtagaagaagtttttcagaag
attcaacatttgagttcattcaactatggttctggaaatagattcttccaacacaagaac
actggatataatcaacaagctgagaggcctcagtttcctcaaggtccagcagtggcaaat
cagcccacagcagtgaggccacccactacagttgaaccaccaagcatgcaacagcaacaa
ccgcaaacacagcagtctcaacctcaacatgttagagagaatcaggtgcagagcgtgcca
aatggctcatcaaacctagccaatagagctgcttcaccgcttcctcaagggcaatctagg
tattttattgttaaaagttgcaaccgagaaaatctggaaatttctgttcagcaaggtgtt
tgggcaacccaaaggagtaatgaagctaaattaaatgaagcttttgaatctacagagaat
gttattttaatattctcagtcaacagaactcggcatttccagggatgtgctaagatgaca
tctaaaattggtgggtttattggtggagggaactggaagtatgcacatggaacagcacat
tatggccggaatttttcagtcaaatggttaaagttgtgcgagctgtcattcaataaaaca
catcatctcaggaatccatataatgacaacctaccagtgaagataagtcgtgattgccag
gagctggagccttttattggtgagcagttggcttctatgctttatcttgaaccagatagt
caactcatggaaatgttaatagctgctgaatccaagcgggaagaggagaaagcaaaagga
gtgagcaatgacgatgcatcagataacccagatatagtgctgttcgaggataatgaagaa
gaagaagaagaagaagagagtgaagaagaggaggatagcataggacagggtggggcgcaa
gggagagggagggggaggggagggatgatgtggcaaggccacatgcccatggcccgtgga
ggaaggccattcctccgtgggtttcctcctgtaatgatgggcggtgatgggtttgggtac
cctgacagctttgggacaccagacatgtttggtgttcctccaagggggatgatgtttgga
ggctatggccctagatttggcggtggtgactttggtggaggtgggatgatgtttcctggt
agacctccccagcctggacctgtctttccaatgggaatggggggtatgatgatgggaaat
gctaacaggccaccgttcatgggcggaatgccaggaggcatgggtcggcctggtcgacca
tcacagttatcgcctttcctccatcctcagccaccaccactacctaacaacaacaacaac
cgaattgtgaagaaggaacagagtcgaacggcaaacgacagcagatatgaggtagcaact
gaaggtggtggcggggataagtttgtgggatcaaggagcagtcttcaaaatgaggagagc
gagagcgaggatgaggcggcaccaaggagatcaaggtatggagagggtagtaagaagaaa
cgatgggaatctgaggctgaagcaggttcagaacagtgggagacaccggggcctgagcct
cagaatcaatga
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