Asparagus officinalis (garden asparagus): 109844610
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Entry
109844610 CDS
T05243
Name
(RefSeq) DNA repair protein RAD4 isoform X1
KO
K10838
xeroderma pigmentosum group C-complementing protein
Organism
aof
Asparagus officinalis (garden asparagus)
Pathway
aof03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
aof00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
109844610
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
aof03400
]
109844610
DNA repair and recombination proteins [BR:
aof03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
XPC-HR23B-CETN2 complex
109844610
BRITE hierarchy
SSDB
Ortholog
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Gene cluster
GFIT
Motif
Pfam:
BHD_3
Rad4
BHD_1
BHD_2
Transglut_core
TPR_VPS8_2
Motif
Other DBs
NCBI-GeneID:
109844610
NCBI-ProteinID:
XP_020269304
LinkDB
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Position
6:62585751..62607006
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AA seq
932 aa
AA seq
DB search
MRTRNQSKRNKEEDPTGGSTSTPKLHGGDDEEEGSLARISKEAVEKLLSRANSRRGRKEC
RKSEDTKETLPREENKGNKEHIQYFGLKRCITENAEQSTSNVGEGMDGSIQCDANEMDWE
EGMISISEFKEENVTVEFVDSSSSAQRKRSRKASAEDKELAVLVHKVHLLCLLARGRLVD
NACDDPLIQASILSLLPSLLLKIMETPGLKANMLGSLVRWFHENFRVRSQTIDRGSFHSN
LAYALEAREGTAEEVAALSVALFRALNLRTRYVSILDVVSLKPDTDASGTLINDAPRLDT
RLYSSTTAVASSFNPAESIDSEKDHNAHESQSGNLHKKERKSTCKKKLLKGVNMTKQIDD
GSGNSSEIKSCKDNLGSCPTESPHVSKRKGDLEFELQMEMALFATAAGTHDSMMEPELHE
SLSSSSSLASPLKKLKEINPSALTNSGSSAIWSRKHGPTLCWAEVYCSMETLNGRWVHVD
AANGVVDGEEKVEAAAAACRRPLKYVVAFAGNGAKDVTRRYCMQWYKIAPRRINSDWWDT
VLAPLKELESRAYAGLKAFKENVSSNLGTKSSELLHPAGCNLIKSSSSQGCTCNKDLSIG
ISLEDVELETRALTEPLPTSQLAYKSHNLYVIEKWLTKHQILHPKGPVLGYCSGHPVYPR
SCVQTLQTKQKWLRMGLQVKVNELPAKTIKHSKKNGNVQISEPNISEEEDGETTIELYGK
WQLEPLQLPQAVNGIVPKNEWGRVDAWSEKCLPPGTIHLRLPGLASVAKRLGIDFAPAMT
GFEFRNGRSFPVYEGIVICTEFKGAIMEAYEEEKERRESEAKKRNEAQALSRWFQLLSSI
VTRQRLQNSYANSSSLQTQSNNNDVAESNSFEDEKKLRGRSGRIVQEAKKVVLPLQDDHV
HVFLIEDQSFDEESGIRTKKCPCGFSIQVEEL
NT seq
2799 nt
NT seq
+upstream
nt +downstream
nt
atgcggaccagaaaccaatccaagcgcaacaaagaagaagacccaaccggcggttcaact
tctaccccgaaactgcacggtggcgatgatgaggaggagggttcccttgcaagaatatct
aaggaggcagttgaaaagctcctcagtagggctaattctaggaggggaaggaaagaatgc
cggaagagtgaagatacaaaagagacattgccaagagaagaaaataaaggtaataaagag
cacattcagtattttggtttgaaacgttgtatcactgagaatgcagaacaaagcacatca
aatgtgggggaaggtatggatggaagtattcagtgtgatgcaaatgaaatggactgggaa
gagggtatgatttctatatcagaatttaaggaggagaatgttactgttgaatttgtagat
tcatcatcctctgctcagaggaagcgatcgcgtaaggcatctgctgaagataaggaatta
gcagtgcttgtgcacaaagtccatttactatgcctactggcaaggggtaggttagtagac
aatgcttgcgatgatcctctgatccaggcttctattctttcccttctaccatcattatta
ttgaagataatggagactccaggacttaaagctaacatgctgggatcgctcgtacgctgg
ttccatgaaaattttcgtgtccgaagccaaactattgataggggatcgtttcactcaaat
ctggcatatgctcttgaagctcgtgaaggaactgctgaagaggttgcagctctgtcagtg
gcactattcagagctctcaatctaagaactaggtatgtgtccattctagatgtggtttct
ttgaagccagatactgatgcgtctggaacattgataaatgatgcacctcggctggacaca
aggttatattcttccacaactgctgtggcaagttctttcaatcctgcagaatcaatcgat
agtgaaaaagatcataatgctcatgaatcacaaagtggcaatctgcataaaaaagagaga
aaatcaacctgcaagaagaaactgcttaaaggtgtcaacatgactaaacaaatagacgat
ggatctggtaattctagtgaaataaaatcatgcaaggacaatttgggttcttgtcctacc
gagtctcctcatgtgtcaaaaaggaaaggagatttagagttcgagttgcagatggaaatg
gctcttttcgccactgcagctggaactcatgacagtatgatggaacctgaattacatgaa
tcattgagtagttcatcttctctcgcttccccattgaaaaagctgaaggaaattaaccct
tcggctttgacaaacagtggttctagtgctatctggtcaagaaagcatggtcctactttg
tgttgggcagaagtctattgcagcatggagacattgaatggaaggtgggtgcacgtagat
gctgctaatggagttgtagatggcgaagaaaaagttgaagctgctgctgctgcatgtaga
aggcctttgaaatatgttgttgcttttgctggaaatggtgctaaagacgtcacccgaagg
tactgcatgcagtggtacaagattgcccctcgacgaataaactcagactggtgggataca
gtgttggcaccattgaaggagttagaatctcgtgcatatgctggactgaaagctttcaag
gaaaatgtttcttctaacttgggtacaaaaagttcagaattgctccatcctgcaggttgc
aatttaatcaaatcttcttctagtcaaggctgtacatgtaacaaagatttgtctattggc
atctcacttgaggacgtggaactggaaacaagggcactaactgagcctcttcctactagc
cagctagcttataaaagtcataacctgtatgttattgaaaaatggcttaccaagcatcag
atccttcacccaaaaggtcctgtacttggttattgttctggtcatcccgtttatcctcga
tcctgtgttcagacgctacaaacaaagcagaaatggttgcgcatgggtttacaagttaaa
gtaaatgagcttccagctaagacaataaagcattcaaaaaagaatggaaatgttcagata
tctgaacctaatatttctgaagaagaagatggggaaaccaccattgagctatatggaaag
tggcaattggaaccattacaacttcctcaggctgtaaatggaattgtgccaaagaatgag
tggggtcgagtggatgcatggtcagagaagtgcctgcctccaggcacaatacacctgaga
ttgcctggactggcttctgttgctaagaggctaggtattgattttgcacctgctatgact
ggatttgagtttcgaaatggtcgttcttttcctgtctatgaagggattgtaatctgcact
gagttcaagggtgctataatggaggcatatgaagaggaaaaagagaggagagaatccgag
gcgaagaagaggaatgaagcccaagctctgtctcggtggttccagttgctctcctccatt
gtaaccaggcagcggttacagaactcatatgccaactcttcatccttgcaaactcaaagc
aataacaatgatgttgctgaaagtaacagttttgaggatgagaaaaagttgagaggaaga
tcgggaagaatcgtacaagaagccaagaaggtggttttgcctctgcaggatgaccatgta
catgtcttccttatagaagaccagagctttgatgaagagagtgggatcagaacgaaaaag
tgcccttgtggattctctatccaagttgaagaattatag
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