Asparagus officinalis (garden asparagus): 109844619
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Entry
109844619 CDS
T05243
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit A
KO
K07466
replication factor A1
Organism
aof
Asparagus officinalis (garden asparagus)
Pathway
aof03030
DNA replication
aof03420
Nucleotide excision repair
aof03430
Mismatch repair
aof03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
aof00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
109844619
03420 Nucleotide excision repair
109844619
03430 Mismatch repair
109844619
03440 Homologous recombination
109844619
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
aof03000
]
109844619
03032 DNA replication proteins [BR:
aof03032
]
109844619
03400 DNA repair and recombination proteins [BR:
aof03400
]
109844619
Transcription factors [BR:
aof03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
109844619
DNA replication proteins [BR:
aof03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
109844619
DNA repair and recombination proteins [BR:
aof03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
109844619
MMR (mismatch excision repair)
109844619
DSBR (double strand breaks repair)
HR (homologous recombination)
109844619
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac-A_C
Rep-A_N
REPA_OB_2
tRNA_anti-codon
RMI1_C
Motif
Other DBs
NCBI-GeneID:
109844619
NCBI-ProteinID:
XP_020269321
LinkDB
All DBs
Position
6:7578407..7581641
Genome browser
AA seq
632 aa
AA seq
DB search
MPPILTVNGISKVNAGDLNLKPVVQVIELKAVGSGERYRILVSDGSETQQALLATQLNEI
VKGGRLKIGSVVQLLEYICSTVQSRRIIVVLNLEVIIVENEIIGNPKLLSEVQPSFLNPS
TTNNSAPSKPVSLNGASGSHPASRFNVNPSTNQSGNSNNFQPTVQPSYKPPPNYRNHGAI
MKNEAPPQVIPIAALNPYQGRWAIKARVTSKGDLRRYNNARGDGKVFSFDLLDSDGGEIR
ATCFNVVVDRFYDVVEAGKVYLISKGSLKPAQKNFNHLSHQWEIFLEATSIVELCPDEDS
SIPEQQFNFRLISEIENTENNSILDVIGIVTAVNPSATILRKNGMETQRRILNLKDISGK
SVELTLWGDFCNREGRDLQEMVDSGFFPVVAVKAGKVNDFSGKSVGTISATQLFINPNFP
EASKLREWFDEGGRNIASQSISKDATPGIPRNEVRKNVSQIKDEGLGRGEKPDWVTIKGT
ISFIKTDNFCYTACPLMIGDKQCSKKVTKVGNGRWCCDRCDKEFEECDYRYLLQAQVQDH
TGVTWVTAFQESGEEILGCSAKELYKIKNEENDDARFAEIIRLSIFEQYLFKLKIKEELY
GDEQRLKITVIKAEKVNPTMESRYLLDLIMKM
NT seq
1899 nt
NT seq
+upstream
nt +downstream
nt
atgcccccgattctaacggtgaacgggatctcgaaggtgaacgctggcgatctgaaccta
aagccggtggttcaagtgatcgagctgaaagctgttggatcgggcgagcggtatcggatc
ctggtatcggatggatccgagacgcagcaagcgctgctggcaactcagctcaatgagatc
gtgaagggtgggaggttgaagattgggtcagttgtgcaattgttggagtacatttgtagc
accgttcaaagtcgaaggattattgtggttctgaacttggaagttataattgtggagaat
gaaatcattgggaatcctaagctgctttctgaggtccaaccttcctttctgaatccatca
actacgaataattcagcaccctcaaaacctgtgtcactcaatggggcatctggctctcat
cctgcttcaagattcaatgtgaatccatcaacaaaccagagcggaaactccaataacttt
cagccaacagtccaaccttcttataagccacctcccaactacagaaatcatggagccatt
atgaagaatgaggctcctcctcaagtaatcccaatagccgctttaaatccttatcagggt
cggtgggcaattaaagcaagagtgacttcaaaaggtgaccttcgacgttataataatgcc
aggggagatgggaaggtgttttctttcgacttacttgattctgatggtggagagattagg
gcaacttgtttcaatgttgttgttgatcgcttctatgatgttgtggaggctggaaaggta
tatttaatatccaagggaagtttaaaacctgctcagaaaaacttcaaccatcttagtcat
caatgggaaatatttttggaagcaacatcaatagtggagctctgcccagatgaagacagc
tctataccagaacagcagttcaatttcaggctcattagcgagattgagaatacggagaac
aactcaattttagatgttattggcattgtcacagctgttaatccttcagcaactatacta
aggaagaatggcatggaaacgcagaggagaattcttaacttgaaggatatctctggtaaa
agtgttgagctaactctatggggagatttttgcaacagagagggccgagatctgcaagaa
atggttgattctgggttttttcctgttgtggctgtgaaggcaggaaaagttaatgacttc
agcgggaaatcagtcggtacaatttctgctactcaactctttatcaatcctaatttccct
gaggccagtaaactgagagagtggtttgatgaaggaggaaggaatattgcttcacagtcc
atctctaaagatgcaactccaggaattccccgtaatgaggtccgtaaaaatgtctcacaa
attaaggacgagggtcttggaagaggggaaaagcctgattgggttaccatcaaaggaact
atttcattcataaagacagataatttctgctatactgcttgccctttgatgattggtgat
aagcaatgcagtaagaaagtaacaaaagttggtaacgggagatggtgctgtgatcgatgt
gataaggagtttgaagagtgcgactataggtatcttcttcaggctcaggtgcaagatcat
actggagtaacttgggtgacggccttccaggaatcaggagaggaaattctcggttgctca
gcgaaggagttgtataaaattaagaatgaagagaatgatgacgcaaggtttgcagaaatt
attcgtctgagtatctttgagcaatacctctttaagctcaaaatcaaagaagagctctac
ggagatgagcagcggctgaaaattacagttatcaaagcagagaaagtgaatccaaccatg
gagagcagataccttcttgatttgattatgaagatgtga
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