Asparagus officinalis (garden asparagus): 109844841
Help
Entry
109844841 CDS
T05243
Name
(RefSeq) pectate lyase-like
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
aof
Asparagus officinalis (garden asparagus)
Pathway
aof00040
Pentose and glucuronate interconversions
aof01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
aof00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
109844841
Enzymes [BR:
aof01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
109844841
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Pectate_lyase_4
Pec_lyase_N
Beta_helix
NLS_NINJA_AFP
Motif
Other DBs
NCBI-GeneID:
109844841
NCBI-ProteinID:
XP_020269582
LinkDB
All DBs
Position
6:complement(18377884..18380594)
Genome browser
AA seq
431 aa
AA seq
DB search
MKYTWLISFVFSVSFLAFVIGETDEEYWRRREIQAQEIARATYVPDPFSVTSSFNAAVHK
SMDKNSTRRGLLKGGSCKATNPIDRCFRCRANWAEDRQRLANCGKGFGRKAYGGGKKSEI
YVVTDDSDDDMENPKEGTLRWGVIQDKPLWIIFERDMVISLKEELIINSWKTIDGRGAKV
EIAHGAGITIQFVTNVIIHNIHIHHIVSKEGGIIRDSLTHMGLRTQSDGDGISIFGASNV
WLDHLTMSNCDDGLIDVIWASTGVTVSNCYFTEHDKVMLLGADKAHQNDSVMQVTVAFNR
FGAKCRQRMPRGRYGFVHIVNNDYNEWGLSAIGGSEHPTMISQGNRYSAGFIKAVCHRDY
AAEWEWKEWNWTSEGDIFLNGAYFNASGVSSSSDVTKNFSRYDVFKAKPGTFVRRLTRHV
GALNCKVGEPC
NT seq
1296 nt
NT seq
+upstream
nt +downstream
nt
atgaagtatacttggctcatatcctttgttttctctgtctcatttttagcctttgtcatt
ggagagactgatgaggagtattggaggaggagggagatacaagcccaagaaattgcaaga
gcaacttatgttcctgaccctttctctgtcacaagctctttcaatgcagctgttcacaag
tcaatggacaagaatagcacaaggagaggcctactgaaggggggctcatgtaaagccacc
aacccgatcgaccgctgctttcggtgccgcgccaactgggccgaagaccgccagcgtctg
gcaaactgcggcaaggggtttggccgcaaagcctatggtgggggcaagaagagtgagatc
tacgtcgtgaccgacgactccgatgacgacatggagaatcctaaggagggcaccttacgg
tggggagtcatccaagataagcccctgtggatcatattcgaacgagacatggtcataagc
cttaaggaagagctcatcatcaacagctggaagaccatcgacggccggggcgccaaagtc
gagatcgcccacggcgcggggatcaccatccagttcgttacgaacgttatcatccacaac
atccacatccaccatatcgtctccaaggagggagggataatacgcgacagcctaacacac
atgggcctgcggacgcagagcgacggggacgggatctcgatctttggcgcgtcgaatgta
tggctcgatcatctgacgatgtcaaactgcgacgacgggctcatcgacgtgatatgggca
tcaacaggcgtgacagtctcaaactgttacttcacggaacacgacaaggtcatgttgttg
ggagccgataaggcgcaccagaacgatagcgtcatgcaagtgacagttgcattcaaccgg
ttcggagcaaagtgtaggcagaggatgcccaggggtcggtacgggttcgtgcacattgtc
aataatgactacaacgaatggggattatctgcaattggtggtagtgagcatccaactatg
atcagccaaggaaacagatacagcgctggtttcattaaagcggtctgccatagggattat
gctgcggaatgggagtggaaagaatggaactggacttccgaaggggatattttcctgaac
ggcgcctacttcaacgcgtcgggagtgagtagctcctccgacgtcaccaagaacttctcc
aggtacgacgtgttcaaggcgaagcctggaacgttcgtccgtaggctcactcgccacgta
ggcgcgctcaactgcaaggtcggcgaaccatgttga
DBGET
integrated database retrieval system
