Asparagus officinalis (garden asparagus): 109845025
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Entry
109845025 CDS
T05243
Name
(RefSeq) LOW QUALITY PROTEIN: ubiquitin receptor RAD23b-like
KO
K10839
UV excision repair protein RAD23
Organism
aof
Asparagus officinalis (garden asparagus)
Pathway
aof03420
Nucleotide excision repair
aof04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
aof00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
109845025
09124 Replication and repair
03420 Nucleotide excision repair
109845025
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03051 Proteasome [BR:
aof03051
]
109845025
03400 DNA repair and recombination proteins [BR:
aof03400
]
109845025
Proteasome [BR:
aof03051
]
Eukaryotic proteasome
Proteasome interacting proteins (PIPs)
UBL-UBA shuttle proteins
109845025
DNA repair and recombination proteins [BR:
aof03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
XPC-HR23B-CETN2 complex
109845025
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Gene cluster
GFIT
Motif
Pfam:
UBA
XPC-binding
ubiquitin
UBA_7
Rad60-SLD
CUE
TECR_N
DUF2076
Ubiquitin_4
UBA_3
A_thal_3526
Rad60-SLD_2
Dsc3_N
UBA_RAD5A
Motif
Other DBs
NCBI-GeneID:
109845025
NCBI-ProteinID:
XP_020269801
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Position
1:complement(275171..289817)
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AA seq
367 aa
AA seq
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MKLTVKTLKGTHFEVKVQPNDTIMAVKKNIEEVQGKDNYPWSQQLLIHNGKVLKDESTLE
ENKISEDGFLVVMLSKSKASGTGXXXXSSSSQPSTTVPASRAPSQAPPQATPQAQVASNP
ATVSERAATGGPLDTYGQAASSLVAGSNLDQIVNQLMDMGGGNWDRDTVLRALRAAYNNP
ERAVEYLYSGIPAAAEIAVPVAPNSNEAATTGSSPLSGLPNSSPLNMFPQGAPNLGAGDG
GSLDFLRNNSQFQALRAMVQVNPQILQPMLQELSKQNPQLLRTIQEHHAEFLQLINEPVE
GAEEDLFDQPEQEMPHEVRVTPAEQEAIGRLEAMGFDRARVIVAFLACDRNEELAANYLL
EHVGDED
NT seq
1104 nt
NT seq
+upstream
nt +downstream
nt
atgaagttgacggtgaagactttgaagggtactcacttcgaagtcaaagtgcagcccaac
gatacgattatggccgtgaagaaaaacattgaggaagttcaagggaaagataattatccg
tggagccaacagttattgatccacaatgggaaggttttaaaggacgaaagcacattggaa
gagaacaaaatcagtgaagatggttttctcgttgtcatgcttagtaagagcaaagcttca
ggtactggcgnnnnnnnnnggtcgtcatcatctcagccttctacaactgttccagcctct
cgagctcctagtcaggctcctcctcaggctaccccacaagctcaggttgcatcaaatcct
gcaactgtatctgaaagggcagcaacaggaggtcctttggatacgtatggtcaggctgca
tctagtttagttgcaggaagtaatctggaccagattgttaatcaattgatggatatgggt
ggtggcaactgggacagggacacagtcttgcgtgcacttcgtgctgcttacaacaatcca
gagcgtgctgtcgaatatctgtattctggtatacctgctgcagcagaaattgctgttcca
gtagctccaaactcgaatgaagctgctacaacaggttcatcgcctctatctggtttgcca
aattcgtcacctttaaatatgttccctcagggggctcccaatctaggtgcaggtgatggc
ggttctctagacttcctgagaaacaactcacagtttcaagcattgagagcgatggtccaa
gttaatccccaaattctacagcccatgcttcaagaattgagcaaacaaaaccctcagctc
cttagaacgattcaggagcatcatgctgagtttcttcagttaataaatgagcctgtagaa
ggtgctgaagaggatctctttgatcagcctgagcaggagatgcctcacgaagtccgtgtc
acacctgcagaacaggaagctatcggacgacttgaagcaatgggatttgatcgagcgagg
gtaattgtggcgttcctagcatgtgacaggaacgaagagttggcagcaaactatttgttg
gaacatgtgggggatgaagattga
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