Asparagus officinalis (garden asparagus): 109845173
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Entry
109845173 CDS
T05243
Name
(RefSeq) DNA mismatch repair protein MSH6 isoform X1
KO
K08737
DNA mismatch repair protein MSH6
Organism
aof
Asparagus officinalis (garden asparagus)
Pathway
aof03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
aof00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
109845173
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
aof03400
]
109845173
DNA repair and recombination proteins [BR:
aof03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
109845173
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_I
MutS_IV
MutS_II
PTM_DIR17_Tudor
TFCD_C
nSTAND_NTPase5
Motif
Other DBs
NCBI-GeneID:
109845173
NCBI-ProteinID:
XP_020269977
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Position
6:64358180..64403679
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AA seq
1314 aa
AA seq
DB search
MGPSRRLSSNGRSPLVRKQSQITTFFSPGKNPTDSPCPKPNPSPNPNSSTEKSKKTPLLI
PSPTKPNPKAPPSTTEKKSFSEDVVGKKISVFWPLDKTWYDGHVKSFNKLTGKHLIQYED
AEEEVLDLEKEKIEWVKEEAPRKLRRLKRVSSSPVPETEIVRDGVNVDDDDDGEDEDWGK
GVGEHVDNDDSKEVELEEEIEEENEKSAAKRSGKRSSSSVGSGKRKKVDVEKLGCSKKFR
FDGDGEGPGDGQKGGSLVTPMSKSRYSTVLTTKGNAGGQQVNNFGSNSTDDAAERFAKRE
AEKFRFLQGHRGRKDARGKRPEDADYDQRTLFLPSDFLKSLSGCQRQWWEFKSKHMDKVL
LFKMGKFYELFEMDAHIGAKELGLQYMKGDQPHCGFPEKNFSTNLEKLARKGYRVLVVEQ
TETPQQLELRRKETGSKDKVVKREICAMVTKGTLIEGDSLLTNPDTSYLMSITEKSNFLE
NQKKESIVIGICLVDVSTSMFMLGQFEDDSERHCLCSILSELRPVEIIKPSELLSPETEN
VLKYHTRNPLINNLVPSAEFWDAKKTIDEIRNIHWVLTHSTSELSTYVNGDNSDNSDTSE
RHSGGLPDVLSEVVTAGPNECCTLSALGGCLFYLRQAFLEEALLKCAKFERLQCSGFSAT
AKRTHMILDAAALENLEILENKKNGGLSGTLFAQLNHCVTSNGKRMLKSWLARPLYNKSL
ILERQDAIAGLKGTGVASALEFRKELLRLPDMERLLARLFAICDSNGRNANRVVLYEDAA
KKQLQEFIAALRGCEVMIQACSSLSTILTNTESSLLHHLLTPGKGLPDVSSVLKHFKEAF
DWIEAERSGRIIPHEGGDIEYDTACKTLRDIESSLKSYLKEQRRILGDSSVTYATVGKDS
YLLEVPESLSLSVPRGYELCSSKKGYVRYRTPEIKKYLSKLAQAEADRESKLKSILQRLL
GQFSEHHNKWRLLVSVIAELDVLISLSISSDYYEGPTCRPVIKEICHSSANTPYISAKNL
GHPVLRSDALGRGSFVPNDVNIGGAGHGTFILLTGPNMGGKSTLLRQVCMTVILAQLGAD
VPAESFELTPVDRIFVRMGAKDHIMAGQSTFVMELSETASMLSSATQNSLVALDELGRGT
STSDGQAIAGSVLEHLVHKIHCRGLFSTHYHRLAVEYENDKEVSLFHMACQVEKGNGGIE
EVTFLYRLTPGSCPKSYGVNVARLAGIPSSVLETATRKSTEFEINYGKGKKESRRDFSAA
IKDEEIAVIKDFLAAAKNLDQDDNTQALNMRLLEEIHQRARLLVGKRRSLLRLF
NT seq
3945 nt
NT seq
+upstream
nt +downstream
nt
atgggcccctctcgccgcctctccagcaacggccgctcccctctcgtccgcaaacagagc
cagatcaccaccttcttctccccaggcaaaaaccccacagattccccgtgcccaaaacct
aaccctagccctaatcccaattcctcaaccgagaaatcgaagaaaacccctttgctcata
ccttcacctaccaagcccaaccctaaggctcctccgtccaccaccgaaaagaaatctttt
tccgaagatgtggttggaaaaaagattagcgttttctggccacttgataaaacttggtat
gatgggcatgttaaatcttttaataagctcactggaaagcatttgatccagtatgaagat
gctgaggaggaggttcttgatcttgagaaggagaagattgagtgggtcaaagaggaggca
ccgagaaagctccggaggttgaagagggtgtcaagctctccagtgccggaaacggaaata
gtgagggatggtgttaatgtagatgatgatgatgacggtgaggatgaggattggggaaag
ggagtcggggaacatgttgataatgatgattctaaggaagtggaactggaggaagaaatt
gaggaggaaaatgaaaaatcagctgcgaagagatctggaaagaggagttcttcttctgtt
ggatcagggaagaggaagaaagttgacgtcgagaagttgggctgcagtaagaagtttaga
tttgatggagatggagagggtccgggagatgggcagaagggtggttctttggtaactcca
atgagcaaaagcagatattctactgtcttaactaccaaaggtaatgcaggtggccaacag
gtaaacaattttggcagcaactcaactgatgatgcagctgagcggtttgcgaaacgtgag
gcagaaaaatttaggtttcttcaaggtcacaggggacgtaaagatgctcgagggaagcgt
cctgaagatgcggactatgatcagagaacactcttcttacctagtgacttcttgaagagt
ttgtcaggttgtcagaggcaatggtgggagttcaaatcaaagcatatggataaggttttg
ttgtttaagatgggcaagttctatgaattgtttgaaatggatgcacatattggagcaaaa
gagcttggtctgcaatatatgaagggagatcaacctcactgtgggtttcctgaaaagaat
ttttcaacgaatttagagaaattggcaagaaagggatatcgtgttcttgttgtggagcag
actgaaacaccacaacaacttgaacttcgccgaaaagagacggggtcgaaagataaggtt
gttaaacgggaaatttgtgccatggttacaaagggaacactgatcgaaggagactcactt
ttgacaaatcccgatacttcatatctaatgtcaattactgagaaaagcaacttcttagag
aatcaaaagaaagaaagcatagtcataggcatctgtttggttgatgtttccacaagcatg
tttatgctaggacagttcgaagatgattctgagcgtcactgcttatgttctatactgtcg
gaattacgacctgtagaaatcatcaagccttcagaactgctcagtcctgaaactgaaaat
gttttgaagtaccacacaagaaatccattaattaataacttggttccttcagcggaattt
tgggatgctaaaaaaactattgacgagatcagaaatattcattgggtcctgacacattca
acatcagaattatcaacttatgtaaatggtgacaattctgataattcagatacatcggag
agacattcagggggccttccagacgttttatctgaagtggtgactgcagggccgaatgaa
tgctgtacactttctgctcttggtggttgtcttttttatttgaggcaagctttccttgaa
gaagcattactcaagtgtgctaagtttgaaagacttcagtgcagtggtttctctgccact
gctaagaggacacatatgatacttgatgcagcagcacttgaaaaccttgagatattggag
aacaagaaaaatggaggcctctctgggacactatttgcgcaattaaatcattgtgtcaca
tctaatgggaaaaggatgcttaagagttggcttgcaagaccactatataacaagagttta
attttggaacgccaagatgccatagcaggtttgaagggtactggtgttgcttctgcactt
gaatttcgtaaagagttattgaggcttccagacatggagcggttactagcacgcctcttt
gctatctgtgacagtaatggaagaaatgcgaatagagtagttctttatgaagatgcagca
aagaagcagcttcaggaatttattgctgctcttcggggttgcgaagtgatgattcaagca
tgctcctccctgagtactattttaactaatacagaatcaagtttgcttcatcatttactg
acaccaggcaaagggctacctgacgtttcttcagttttaaagcacttcaaggaggcattt
gactggatagaagctgaacgttcagggaggattatacctcatgaaggaggtgatattgaa
tatgatacagcttgcaagacgttgagggacattgagtcttctctgaagagttacctgaaa
gaacaacgcagaatacttggggattcatcggttacttacgctactgtcgggaaagattca
tacctcctagaagtacccgaaagcctgagtttgtctgtcccccggggatatgaattatgc
tcttcgaaaaagggatacgttcgatatcggacaccagaaattaagaagtatttgtcaaaa
cttgctcaagctgaagcagacagagaatctaaattgaaaagtattcttcagagactatta
gggcaattcagtgagcaccataataaatggaggctgttggtttctgtaatagcagagcta
gatgtattgattagtctatccatttcaagtgactactatgaaggaccaacgtgtcgacca
gttatcaaagaaatatgccattcaagtgccaacactccttatatttctgcgaaaaatctg
gggcatcctgttctcagaagtgatgcattaggaagaggttcttttgttcccaatgatgta
aatattggtggagctggacatggaacattcatccttcttacaggtccaaacatgggtggt
aaatcaactcttcttcgtcaggtttgcatgactgtgattttagcgcagctaggagcagat
gttcctgcagaaagctttgagttaacgcctgttgaccgtatctttgttcggatgggagcg
aaggatcatattatggctggtcaaagtacattcgtgatggaactctcggagactgcatca
atgctgtcttctgctacccaaaattctctagtagcactagatgaacttggacgaggcaca
tcaacgtctgatggacaagctattgcaggatctgtcttagagcatttggtgcacaaaata
cattgccgagggttgttttcaactcactatcatcgactagcagtagaatatgagaatgac
aaagaggtatcattgtttcatatggcttgccaagttgagaaggggaacggaggcattgaa
gaagttactttcctttatagattgactcctggttcctgtcctaaaagctatggtgtcaat
gttgctcggttggcaggaataccgtcttcagttcttgaaactgccacaagaaagtccact
gagtttgagattaattacgggaaaggaaagaaagaatctcgaagagacttttctgccgcc
attaaggatgaggaaatagctgtcatcaaagattttttagccgctgccaagaatttggat
caagatgacaatactcaggcattaaacatgcgtttgcttgaagaaattcatcagagggct
cgattgctcgttggaaagcgaagaagcctcttgcgccttttttga
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