Asparagus officinalis (garden asparagus): 109845195
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Entry
109845195 CDS
T05243
Name
(RefSeq) protein CLP1 homolog
KO
K14399
polyribonucleotide 5'-hydroxyl-kinase [EC:
2.7.1.78
]
Organism
aof
Asparagus officinalis (garden asparagus)
Pathway
aof03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
aof00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
109845195
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aof03019
]
109845195
Enzymes [BR:
aof01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.1 Phosphotransferases with an alcohol group as acceptor
2.7.1.78 polynucleotide 5'-hydroxyl-kinase
109845195
Messenger RNA biogenesis [BR:
aof03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
109845195
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CLP1_P
Clp1
CLP1_N
nSTAND3
AAA_16
AAA_22
ATP_bind_1
AAA_24
SRPRB
CbiA
MMR_HSR1
ABC_tran
Motif
Other DBs
NCBI-GeneID:
109845195
NCBI-ProteinID:
XP_020270004
LinkDB
All DBs
Position
6:18651789..18659470
Genome browser
AA seq
433 aa
AA seq
DB search
MSSAPATGPGSTRQFKLDRESELRVEVGPDTQIRIRLLSGTAEIFGTELPPDTWLSIPPR
HKFAVFTWNGATVELEGFSDVEYVADETPMVSYVNVHAILDARRSRAKAAASSDVDNSQG
PRVIVVGPTDSGKSSLCRMLLSWASKQGWKPTFVDLDIGQGSITIPGCIAATPIEMPIDA
VEGIPLEMPLVYFYGHTTPSMNGDLYKVLVKELAQTLERQFLGNAESRAAGMVINTMGWV
EGLGYELLLHAIDTFNANVVLVLGQEKLCSMLKDVVQKNKPNVDIVKLHKSGGVVPRNPK
VRQKARSSRIREYFYGLLDDLSPHSNIVNFSDISVFRIGGGPQAPRSALPIGAEPLADPV
RLVPVTVNRDLLHLVLAVSYAKEPDQIISSNVAGFIYVTDIDIMRKTITFLAPCAGELPS
KFLIAGTLNWLES
NT seq
1302 nt
NT seq
+upstream
nt +downstream
nt
atgtcatcagcaccggcgacgggcccaggctcgacccggcaattcaagcttgacagagaa
agcgaacttcgggtcgaagtcggacccgatacccaaatccggatccgattactctccggc
accgccgagatcttcggcaccgagcttcctcccgatacttggctctccattccccccaga
cacaaattcgctgtttttacgtggaatggtgcgactgtggaattggaaggcttcagtgac
gttgagtatgttgctgatgagactcctatggttagttatgtaaatgttcatgcgatactt
gatgcgcgaaggtccagggctaaggctgcagcaagcagcgatgtggataattcacagggt
ccaagggtgattgttgtagggccgactgattcaggaaagagtagcctgtgtaggatgctc
ttgagctgggctagtaagcagggttggaaaccgacattcgtggatttggatattggtcag
gggtcgatcactattcctggatgtatagctgctactcccatcgaaatgcctatagacgca
gtcgaagggattcctcttgaaatgccattagtgtacttctatgggcacacaactcctagt
atgaatggagatttgtacaaagttcttgtgaaggagctagctcaaactttggagaggcag
ttcttgggaaatgctgaatctagagctgctggaatggtgatcaacactatgggatgggtc
gaaggtcttggatatgagttgctacttcatgcgattgataccttcaatgctaatgttgtt
ttggtcttggggcaggagaaactttgcagcatgttgaaagatgtggtgcaaaagaataag
cctaatgtggatattgtgaaacttcacaagtctggcggtgttgtccccaggaatccgaag
gtccgccagaaggctaggagctctaggattagggagtacttttatgggctgcttgatgat
ctatcaccacattcaaatatagtgaacttcagtgatatttctgttttccgaattggtggc
ggcccacaagctccccgttcagcgcttcctattggagctgagcctctagcggacccagtt
cgactagttcctgttaccgttaatcgtgacttgctccatttagttttagctgtctcatat
gcaaaggaacctgatcaaatcatctccagcaatgttgccggtttcatctatgtcacagat
attgacatcatgaggaagacgatcacattccttgcaccttgtgctggtgaacttccaagc
aagtttttgattgcaggaacattgaattggttggagagctaa
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