Asparagus officinalis (garden asparagus): 109845381
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Entry
109845381 CDS
T05243
Name
(RefSeq) DNA repair helicase XPB1 isoform X1
KO
K10843
DNA excision repair protein ERCC-3 [EC:
5.6.2.4
]
Organism
aof
Asparagus officinalis (garden asparagus)
Pathway
aof03022
Basal transcription factors
aof03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
aof00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
109845381
09124 Replication and repair
03420 Nucleotide excision repair
109845381
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
aof03021
]
109845381
03400 DNA repair and recombination proteins [BR:
aof03400
]
109845381
Enzymes [BR:
aof01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
109845381
Transcription machinery [BR:
aof03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
109845381
DNA repair and recombination proteins [BR:
aof03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
109845381
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ERCC3_RAD25_C
Helicase_C_3
ResIII
Helicase_C
SNF2-rel_dom
Motif
Other DBs
NCBI-GeneID:
109845381
NCBI-ProteinID:
XP_020270221
LinkDB
All DBs
Position
6:5922896..5942546
Genome browser
AA seq
766 aa
AA seq
DB search
MADRGERGRPSKKHKSSSKAAQVVEEEELYFGEDSDDDRRRGETKKNDFTKLELKPDHVN
RPLWACGDGRIFLETFSPLYKQAYDFLIAIAEPVCRPESMHEYNLTPHSLYAAVSVGLET
ETIINVLNKLSKTKLPKEMIDFIHASTANYGKVKLVLKKNRYFVESPFPEVLKTLLRDDV
ISRARICFEGHHEGGSFTISKTAGEIEGGHDELLNGVDLAAAAEEKETHSFEIDPAQVEN
VKQRCLPNALNYPMLEEYDFRNDTVNPDLNIELKPQAQPRPYQEKSLSKMFGNGRARSGI
IVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAFQFQLWSNIKDEHICRFTSDNK
ERFRGNAGVVVTTYNMVAFGGKRSEDSEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVIS
ITKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTK
EFFAEYLKRENSKKKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTAYAMK
LRKPMIYGATSHAERTRILKAFKCSPDVNTIFLSKVGDNSIDIPEANVIIQISSHAGSRR
QEAQRLGRILRAKGRLQDRMAGGKEEYNAFFYSLVSTDTQEMYYSTKRQQFLIDQGYSFK
VITSLPPPDSGSELSFHTLQEQLDLLSKVLSAGDDVVGLEQLEEDADDIALQKARRSVGS
MSALSGASGMVYMEYNTGQGKKGHGKSKPKDPAKRHHLFRKRYSQA
NT seq
2301 nt
NT seq
+upstream
nt +downstream
nt
atggcagaccgtggtgaaagaggtcggccgtccaaaaagcacaagtcctcgtcaaaagcc
gctcaggttgtcgaagaagaagagctctatttcggagaagattcggatgatgataggcga
cgaggagagacgaagaagaacgacttcacgaagcttgagttgaagcctgatcacgttaac
aggcccctttgggcgtgcggcgacggcaggatatttcttgagacgttttctcctttgtat
aaacaggcttatgacttcctcattgccattgctgagccagtgtgcaggccagagtctatg
catgagtacaacctaacacctcattctctctatgctgctgtgtcggttgggcttgagacc
gagacaatcataaatgtcttaaacaagctatcaaagactaagttgccgaaggagatgata
gatttcatccatgcttccaccgccaattatgggaaagtgaaactcgtgttgaaaaagaat
cgatactttgtggagtcaccttttccggaggtgctgaagacattgcttagggatgatgtc
atatctcgtgcgaggatttgttttgagggtcatcatgaaggtggttcatttacaattagc
aaaacggctggagaaatagaaggtggccatgatgagttgctgaatggtgtagacttagct
gctgctgcggaagagaaagaaacacattcctttgaaattgatcctgcccaggttgagaat
gtgaagcaaagatgtttgcctaacgccttaaattatcctatgctggaggagtatgatttt
agaaatgatacggtgaacccagacttgaacatagaattgaaaccgcaagcacaacctaga
ccatatcaagaaaagagtctcagcaagatgtttgggaatggaagagcaaggtctggcatt
attgttttgccttgtggtgctggaaagtctttggttggtgtctctgcggcatgtcgaatt
aagaagagctgtctttgcttagctaccaacgcggtctctgtggatcaatgggctttccag
tttcagctttggtctaatataaaggacgaacatatttgtcggtttacatctgataacaaa
gaaagatttcgtggcaatgctggtgtggttgtcaccacttacaacatggttgcatttggt
ggaaaaaggtctgaagattctgagaaaatcattgaagaaataagaaatagagaatggggt
ttgcttcttatggacgaggtgcacgttgttcctgcacacatgttccggaaggtcattagc
attactaagtctcattgcaagcttggacttactgcaacactagtgagagaggacgaacgt
atcacagatctcaactttcttataggaccaaaattgtatgaagctaattggttggatttg
gtaaaaggagggttcatagctaacgttcagtgtgctgaagtgtggtgccccatgacgaag
gaattctttgcagagtatttgaaaagggaaaattctaaaaagaagcaggcactttacgtg
atgaatccaaacaaattcagagcctgtgaatttctgattcgctttcatgagcaacaacgt
ggtgataagattattgtgtttgctgataatctttttgccctcaccgcatatgcaatgaag
ctacggaaacctatgatatatggtgcaaccagccatgctgagaggacaagaattcttaaa
gcattcaaatgtagcccggatgttaatacaattttcttatctaaggtgggtgacaattcg
atagatattcctgaagctaacgtgataatacaaatatcatctcatgctggttcaagacgt
caagaagcacaacggctgggccgtattcttagggcaaagggtcggctccaagacagaatg
gccggtggaaaagaagagtacaatgcctttttctattctctagtatctacagatacacag
gagatgtattactctaccaaaaggcagcaatttctgattgaccaaggctacagctttaag
gtgatcacgagccttcctcctcctgattcaggatctgagctcagcttccataccctacag
gagcaacttgacctcctcagcaaggtattgagtgctggagatgatgtggttggcttggag
cagttggaagaagatgctgatgacattgctctacagaaggcccgacgttctgtgggatca
atgagcgctctatcaggagctagcgggatggtgtacatggagtacaatactggccaaggc
aagaagggccatggcaagagtaaaccaaaggacccggcaaagagacaccatttgtttagg
aagcgctatagccaagcctag
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