Asparagus officinalis (garden asparagus): 109845383
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Entry
109845383 CDS
T05243
Name
(RefSeq) LOW QUALITY PROTEIN: replication factor C subunit 3
KO
K10756
replication factor C subunit 3/5
Organism
aof
Asparagus officinalis (garden asparagus)
Pathway
aof03030
DNA replication
aof03410
Base excision repair
aof03420
Nucleotide excision repair
aof03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
aof00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
109845383
03410 Base excision repair
109845383
03420 Nucleotide excision repair
109845383
03430 Mismatch repair
109845383
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
aof03032
]
109845383
03036 Chromosome and associated proteins [BR:
aof03036
]
109845383
03400 DNA repair and recombination proteins [BR:
aof03400
]
109845383
DNA replication proteins [BR:
aof03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
109845383
DNA Replication Termination Factors
ELG1-RFC complex
109845383
Chromosome and associated proteins [BR:
aof03036
]
Eukaryotic type
Sister chromatid cohesion proteins
CTF18-RFC complex
109845383
DNA repair and recombination proteins [BR:
aof03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
109845383
Check point factors
HRAD17(Rad24)-RFC complex
109845383
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac_C
AAA
DNA_pol3_delta2
RCF1-5-like_lid
AAA_16
AAA_22
AAA_assoc_2
DUF815
AAA_11
DNAX_ATPase_lid
Rad17
AAA_7
AAA_5
ATPase_2
AAA_3
AAA_14
RuvB_N
AAA_24
bpMoxR
ResIII
nSTAND3
AAA_19
MCM
AAA_30
AAA_28
ABC_tran
RNA_helicase
Mg_chelatase
AAA_25
Motif
Other DBs
NCBI-GeneID:
109845383
NCBI-ProteinID:
XP_020270226
LinkDB
All DBs
Position
6:complement(8152925..8159077)
Genome browser
AA seq
358 aa
AA seq
DB search
MTETTSPMEIDAAPPSIPSKGKSVTSPSDRKSAPWVEXYRPESLPPQPDQQKSDIVDTID
RLTNENKLPHLLLYGPPGTGKTSTILAMARKLYGSQYHNMILELNASDDRGIGVVRQQIQ
DFASARSLSFGAPVAVKLVLLDEADAMTKDAQFALRRVIEKYTKSTRFALICNHVNKIIP
ALQSRCTRFRFAPLDASNIRERLQYVIKAEGLDVSESGLTALVRLSNGDMRKALNILQST
HMASQHITEEAVYLCTGNPMPKDIEQIAFWLLNESFTDSFKYISDTKMKKGLALVDIVRE
VTMFVFKIKMPSAVRVKLINDLADIEYRLSFACNDKLQLGSLISTFTTARCALVAAAQ
NT seq
1077 nt
NT seq
+upstream
nt +downstream
nt
atgacggaaacaacctcgccgatggagatcgacgccgctcctccgtcgatccccagcaag
ggcaagtccgtaacctccccctccgaccgcaagtccgccccctgggtcgagnagtaccgc
ccagagtctctcccgccacaaccggaccaacagaagagcgacatcgtcgacacaatcgat
cggttgacaaacgaaaacaagctgccgcatttgcttttgtacggaccgccggggactggg
aagacgtcgacgatcttggcgatggcgaggaaactgtacggatctcagtaccacaacatg
attttggagctgaatgcgtcggatgaccgaggaattggtgttgttaggcagcagattcag
gatttcgcgagtgctcgtagcctttcctttggtgcaccggttgctgtgaagttggttttg
ctcgatgaggcagatgcaatgaccaaggacgcacaatttgctctgcgtagagtgattgag
aaatacacaaagagcactaggtttgcacttatatgcaaccatgtcaacaaaattattcca
gctttgcagtcaagatgcactcgatttcgttttgctcctcttgatgcttccaacattagg
gaacggcttcaatatgttataaaggctgaagggttggatgtatcagagagtggcttaaca
gccctagtacggctgagcaatggtgacatgagaaaggctcttaacatattgcagtcaacg
catatggcttctcagcatataacagaagaagctgtctacctttgcactggaaacccaatg
ccaaaggacattgagcaaatagccttctggcttcttaacgaatctttcacagatagtttt
aagtatatatctgataccaaaatgaagaaagggttagctttggtggatattgtgagggag
gtcactatgtttgttttcaagattaaaatgccatcagctgtccgagtaaagctaattaat
gatttggctgatatcgagtacaggttgagctttgcatgcaacgataagctacagctcggg
tcactcatctcaactttcactactgctcgctgtgctttggttgctgcagctcaataa
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integrated database retrieval system
