Asparagus officinalis (garden asparagus): 109845773
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Entry
109845773 CDS
T05243
Name
(RefSeq) formamidopyrimidine-DNA glycosylase isoform X1
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
aof
Asparagus officinalis (garden asparagus)
Pathway
aof03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
aof00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
109845773
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
aof03400
]
109845773
Enzymes [BR:
aof01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
109845773
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
109845773
DNA repair and recombination proteins [BR:
aof03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
109845773
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
H2TH
Fapy_DNA_glyco
Fpg-like_C
TFIIF_alpha
DDHD
Motif
Other DBs
NCBI-GeneID:
109845773
NCBI-ProteinID:
XP_020270633
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All DBs
Position
1:1903852..1907981
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AA seq
369 aa
AA seq
DB search
MPELPEVEAARRAIQENCINKRIRTSTIADDPKVIGGVSPSEFQSSINGKTIVAAHRKGK
NLWLQLDSPPFPSFQFGMTGAVYIKGVAVAKYKRSAVSDEEEWPSKYSKFFIVLEDGLEL
SFTDKRRFAKVRLLQDPTSVPPISELGPDALLEPMKVEEFVDSLSKKKIAIKALLLDQGY
ISGIGNWVADEVLYQARIHPLQVAATLSKESCETLHCCIKEVIEKAVEVGADSSQYPSDW
IFHSREKKPGKAFVDGKKVDFITAGGRTSAYVPELQKLSGAQTEKKGRQGKPRKEESDEE
PEPEDEENGSSKSRKSKKAAGGSKKQKKKVRQDDSDDDDSNSDEDEKPQKSAKRSTRKQP
GKQKKKARR
NT seq
1110 nt
NT seq
+upstream
nt +downstream
nt
atgccggagctccctgaggttgaagcagcaagaagagcaatccaagaaaactgcatcaac
aaaaggatcagaacctccacaatcgccgacgaccccaaagtcatcggcggcgtctctccg
tcggagttccagtcctccatcaacggcaaaaccatcgtcgccgctcaccgcaagggcaag
aatctatggctccaactcgactcccctcccttcccctccttccaatttgggatgactggt
gctgtttatattaagggggttgctgttgcaaagtataagaggtcggcagtgagcgacgag
gaggaatggccttcaaagtactccaaatttttcatagtgcttgaagatggtttagagtta
tctttcactgataaaaggcgctttgcaaaagttcgcttacttcaagatccaacttctgta
cctccaatatccgagcttggtccggatgcattgttagagcctatgaaagtggaggaattt
gtagattctttgagcaaaaagaaaattgcaattaaggctctactactcgatcagggttat
atttcaggcattggcaactgggttgcagatgaagtgctttatcaggccagaattcatccc
ctgcaagttgctgcaactttgtcgaaggagagctgtgaaactttacattgctgcatcaaa
gaggttattgaaaaagctgtggaagttggagcagatagtagtcaatatcctagtgattgg
atatttcattcccgcgaaaagaaacctggaaaagcatttgtggatggaaagaaagtcgac
ttcatcactgcaggcggaagaacttcagcctatgtaccagagttgcagaagttgagtgga
gcacaaactgaaaagaaaggccgccagggtaaacctagaaaggaagaatcagatgaagaa
ccagaacctgaggatgaagagaatggaagctcaaagtccaggaaaagcaagaaagctgca
ggaggtagcaagaagcaaaagaagaaagtccgccaggacgacagtgatgatgatgatagc
aatagcgacgaagatgaaaagccccagaagtcagcaaagagatcaacaaggaaacaacct
ggaaagcaaaagaaaaaagcaaggaggtag
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