Asparagus officinalis (garden asparagus): 109845785
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Entry
109845785 CDS
T05243
Name
(RefSeq) protein SMG7-like
KO
K14409
protein SMG7
Organism
aof
Asparagus officinalis (garden asparagus)
Pathway
aof03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
aof00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
109845785
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aof03019
]
109845785
Messenger RNA biogenesis [BR:
aof03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Other surveillance factors
109845785
mRNA cycle factors
Common to processing body (P body) and stress granule
109845785
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EST1_DNA_bind
EST1
Motif
Other DBs
NCBI-GeneID:
109845785
NCBI-ProteinID:
XP_020270646
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All DBs
Position
1:complement(1908819..1920510)
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AA seq
1000 aa
AA seq
DB search
MMIAPMDKVSAPSSRELAERLYKKNIELESGLRKFAKSRAPSDPNIWFQIRENYEAIILE
DHGFSEKHNIELALWQLHYRRIEEFRALLNAAKSAGSVTTQGGKAPPRPDSIKKIRSGFK
TFLSESTGFYHDLILKIRSKFGLPVGFFSDGPVSQITISKDEKKSAVMKKGLMSCHRSLI
YLGDLARYKGLCGEGDSVTREYAAASCYYKQAAGLCPSSGNPHHQLAILASYAGDDLLSI
YRYFRSLAADIPFSTARDNLIIAFEKNRQSFSQLPVNPKALAVKRTALQTAGRGRGRGDA
SRLLSKNSKPEATPVKEHDLSISEVLKAFTTRFVRVNGILFTRTSLETFGEILSAVKSDL
LDLMSSGPEEELNFGQDATENARFIVRLIATLIFTVHNAIRESDGQSYAEILQRTVLLQN
AFTAVFEFSGHIIKRCVQLDDTASSFLLPAILVFIEWLACHPAIAAGSDIEEKQAAARSF
FWNQCVAFMNKLVSNGLIAGAANEDETCFFDMTQYDEGETGNRTALLEDFELRGFLPLVP
AQLILDFSSKHSYGSVGSEKEKQARVQRILAAGKALMNVVRIDQKAIFFDPCLRRFVIGI
EPPVLDDYMSSELSDASKVEATKQASPVENVLKYGMTKPKTQLDGEDEDEEEIVFKPTVG
EKYPGVIVSTSMSTTYGTIQPEQISAGEWATTSMPTAYETIQPTQTSSKGEWENYGTQLP
SPVSNLQMPTGLHTSSPFDAAAVNFSQQPLPHMNLNTSKWLMEQAALLSNGLKKFKINEN
GHVANHGSQEGLISLQAPAFAFSPLNSAIDPISSRSCEQSKAAEAFIPSTLHSLMPSGMT
FDTASMNHPGISQTTSKKTPVSRPVRHLGPPPGFSNTPKPLDDSNSETAINGQNPYVDDY
SWLDGYHSPTKASEMERSVNHVTHMYQHPTAKLNGVTSFPFPGKQVSTMQTQVVNDTWQD
FPLYDHLKPTSEWQLQQASFKPSMMPEQHQAHSLWSGYFV
NT seq
3003 nt
NT seq
+upstream
nt +downstream
nt
atgatgattgctccaatggataaagtatcagctccctcttcgcgggagctcgcagaacgt
ctctacaagaagaatatcgaactggagagcggtcttcggaagtttgccaagtctagagct
ccgtcagacccgaatatatggtttcagattcgtgagaattatgaggccataatccttgaa
gatcatggcttttctgaaaagcacaatattgagttggccctttggcaattgcactacagg
agaatcgaagaattccgtgcactcctcaatgctgccaaatctgctggatcagttacgacc
caagggggaaaagctcctcctcgccctgattccattaagaaaatccgttctggctttaaa
acctttctttcagagtcaactggattttatcatgatctgattctaaaaatcagatctaag
tttggtttgcccgtaggtttcttttctgatggccctgtaagccaaattaccatatcaaaa
gatgaaaagaaatcagctgttatgaaaaaaggactcatgtcttgtcaccgatctctaata
tacctgggtgaccttgctcgttacaaaggattatgtggagagggggactctgttactcgc
gaatatgctgcagcatcctgttactataagcaagcagctggcctttgcccatcaagtggc
aatccacaccatcagcttgcaatattggcatcctatgctggtgatgatttgttgtcaata
taccgctattttcggagtctagcagcagatattcctttctcaacagcaagggacaatttg
attattgcatttgagaagaatcgtcaaagcttttctcagctacctgttaatcccaaagct
ctggcagtaaagagaacggctttacaaaccgctgggagaggaagaggcaggggggatgct
agtaggctgttgtcaaaaaattccaaaccagaagcaactcctgtgaaagaacatgatttg
agcatctctgaagttttgaaggctttcaccactcgttttgtacgagttaacggaattctt
ttcactcgcacaagcttggaaacttttggagaaattctctctgcggtaaaaagcgatcta
cttgatcttatgtcttctggacctgaagaggagttaaatttcggtcaagatgctactgaa
aatgcacgttttattgtgaggctcattgcgacgcttatattcacagtccataatgcgatt
agggaatcagatggccagtcatatgctgagatcctgcagcgcacagtgcttcttcagaat
gcattcacagctgtttttgagttttctggacatattattaagagatgtgtgcagttagat
gatactgcatcaagctttcttctaccagccattttagttttcattgagtggttggcatgc
catccagccattgccgcaggctctgacatcgaggaaaaacaagctgctgcgagatcattc
ttctggaatcaatgcgtagcctttatgaataaacttgtatccaatgggcttattgctgga
gctgcgaacgaggatgaaacttgcttttttgatatgactcagtatgatgaaggagaaact
ggtaataggactgcattattggaagattttgaattgagaggatttttacccctagtgcca
gcacaactgattctggatttttcaagtaagcattcttatggaagtgttggaagtgagaag
gagaaacaagcccgtgtacagcggattctcgccgcaggcaaggctcttatgaatgtagtg
cggattgatcaaaaggctatattttttgatccttgccttaggagatttgtaattggtata
gagcctccagtattggatgattacatgtctagtgagttgtcggatgcatctaaggtggag
gccactaaacaagcaagtccagttgagaatgttctcaagtatgggatgacaaaacccaag
acacagctagatggagaggatgaagatgaagaagaaattgtcttcaagcctactgtaggg
gagaagtatcctggtgtaattgtttccacttccatgtcaactacttatgggacaattcag
cctgagcaaatttctgcaggagaatgggctaccacttccatgccaactgcttatgaaacc
attcagcctacgcaaacttcttcaaaaggtgaatgggaaaattatggtacacaacttccc
tctcctgtcagcaatcttcagatgcctaccggcttgcatacaagttcaccatttgatgct
gctgctgtaaatttctcccagcaacctttaccgcacatgaatctgaacacctcaaaatgg
ctaatggaacaagcagcacttttgtcaaacggtttaaagaaatttaaaatcaatgagaat
gggcatgtagccaatcatgggtcccaagaaggcttgatctctttgcaagctccagcattt
gcattctcacctttgaattcagcaattgatcccattagcagtaggtcttgtgaacagtca
aaagccgctgaagcttttataccatctaccctgcattccttaatgccttcagggatgact
tttgacaccgcatctatgaaccacccaggaatatcgcagactacatcaaagaaaactccc
gtgagtagacctgttaggcacttgggtcctcctcctggatttagcaacacccctaagcct
ctggatgactcgaactcggaaacagcgatcaatggacagaatccatatgtcgatgactac
agctggttagatggttatcattctcctacaaaagcttcggagatggaaaggtcagttaat
catgtcacacatatgtatcagcatcctactgctaagttgaatggtgtgacgagcttccct
ttccctggaaagcaagtttccaccatgcaaacccaagtggtgaatgatacgtggcaagat
ttccccctttacgaccatctcaagcctacctcagaatggcaacttcagcaagctagcttt
aagccttctatgatgccggagcagcatcaagcacattctctctggtctggttactttgtg
tga
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