Asparagus officinalis (garden asparagus): 109846278
Help
Entry
109846278 CDS
T05243
Name
(RefSeq) LOW QUALITY PROTEIN: vacuolar protein sorting-associated protein 41 homolog
KO
K20184
vacuolar protein sorting-associated protein 41
Organism
aof
Asparagus officinalis (garden asparagus)
Pathway
aof04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
aof00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
109846278
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
aof04131
]
109846278
Membrane trafficking [BR:
aof04131
]
Endosome - Lysosome transport
Tethering complex
Hops complex
109846278
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_Vps41
zf-RING_Vps41
Clathrin
zf_RING_Vps8
zf-RING_2
zf_RING_Vps8_fungal
zf-RING_11
Motif
Other DBs
NCBI-GeneID:
109846278
NCBI-ProteinID:
XP_020271088
LinkDB
All DBs
Position
6:68218281..68229164
Genome browser
AA seq
373 aa
AA seq
DB search
MSSVKYSGLSCSDFFTYMSSRVKVVQLMILDSKKAVSLLIQQQXIIPPPEVVGQFMGAIK
KCDSKYFLHLYLHSLFVVDPNAGREFHDLQVELYVDYEPRMPLPFLSLSEHYRLDKAYDI
CVKKDLPREQAYLLGRMGNTKKALTVIIDKLEDIEEAVAIVSNQHDDELWEELIKQCLRK
PEMVGMLLEHTIGNLDPLYIVSRVPNGVQIPRLRDRLVKIITNYRTETSLRHGCNDILKA
DCVNLLMKYYKEARHAIYLSSIEEETLRRREDNTSNNEMAIMPTSRTMDVKSKTRGGARC
CLCFDPFSLQNLSVIIFFCCHAFHVSCLLGGADSIDIGSEDIMHIGDDGDDSDEDGNSGG
SWMRCVLCTTTSG
NT seq
1122 nt
NT seq
+upstream
nt +downstream
nt
atgtcttcagtgaaatacagtggcctgtcatgctctgacttcttcacttacatgtcctcc
cgagtaaaggttgttcaacttatgatacttgatagtaaaaaggcagtgtctttattgatc
caacagcaangtatcatacctcctcctgaagttgtgggacaatttatgggtgccattaag
aagtgtgatagcaaatatttcttacatttatacttgcattctctatttgtagttgaccct
aatgcgggaagggagttccatgatttgcaggtagagctttatgtggattacgaaccacgg
atgccgcttccatttcttagtcttagtgaacattataggcttgacaaggcatatgatatt
tgtgtgaagaaagatcttcctagagagcaggcctatcttctagggagaatgggaaacaca
aaaaaagcccttacagttatcatagataaattagaagatattgaggaggcagtagcaatt
gtgtctaatcagcatgatgatgaattatgggaggaattaattaagcaatgtcttcgcaag
cctgaaatggtaggaatgttgttggaacacactattggcaatttggatcctctatatata
gtcagtcgtgtgccaaatggagttcagatacctaggctaagagatcgccttgtcaaaatc
atcacgaattatcggacagaaacttctctgagacacggatgcaatgatattctcaaggcc
gactgtgttaaccttttgatgaagtactacaaagaggccagacatgcaatttatttgagc
agcatagaagaagaaaccctaagaagaagggaagataacacttcgaataatgagatggca
ataatgccaacttcaagaacgatggatgttaagtccaaaacaaggggtggtgctagatgt
tgcttgtgctttgatcctttctcccttcaaaacctttcggtcattattttcttttgttgc
catgcttttcatgttagttgcctgctgggtggcgcggatagtattgatataggaagtgaa
gatataatgcatattggtgatgatggtgatgatagtgatgaggatggcaactctggtggg
tcttggatgcgctgtgtgttgtgcactaccaccagtgggtga
DBGET
integrated database retrieval system
