Asparagus officinalis (garden asparagus): 109846430
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Entry
109846430 CDS
T05243
Name
(RefSeq) zinc finger CCCH domain-containing protein 27
KO
K13192
RNA-binding protein 26
Organism
aof
Asparagus officinalis (garden asparagus)
Brite
KEGG Orthology (KO) [BR:
aof00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
aof01009
]
109846430
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aof03019
]
109846430
03041 Spliceosome [BR:
aof03041
]
109846430
Protein phosphatases and associated proteins [BR:
aof01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
109846430
Messenger RNA biogenesis [BR:
aof03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Negative regulators of mRNA 3' end processing
109846430
Spliceosome [BR:
aof03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA binding proteins (RBPs)
109846430
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
Nup35_RRM_2
PWI
zf_CCCH_4
RRM_Nup35
RNA_bind
zf-CCCH
Motif
Other DBs
NCBI-GeneID:
109846430
NCBI-ProteinID:
XP_020271253
LinkDB
All DBs
Position
6:11090845..11111078
Genome browser
AA seq
1057 aa
AA seq
DB search
MKFEEASLTGYLVDNLKPLTQADPVILAKYVVALLNKDKPSKELQKLCADNLVEFLGNGA
KSFTAKLFQALDDGSIVKIDRNLDVIQKLEPSEALPIGGIHPLKNSSLEEVNHSSTSSES
SSDPEDKEVSDDDDDRNHKHRRREARPNSLETDTQEQSFRRSNRKRNKPYDNGKRLLDTD
LQLSEIHKEYNPSLDRNTSTKFDKRRSDLAPLLRAPIDLGPRTRFSQPFRNDPGPRYDLS
TSIGRPVGRGRARSTVPWNQHDSRFNPHDALDFASQMASQGPAHPNLFVGTGLPSAGSTQ
SSSWGGFGFIPGMSNGIMDPLNPLGLQGALGPSINPPLNLGIPRQRCRDFEERGFCLRGD
MCPMEHGLNRIVVEDVQSLSQFNLPVSISNSNALGIQAGSGSVPPASAASGQLANAKITS
SKISRSGATEDAPKLNDIPSTSAGVDADVYDPDQPLWNNDRSNASASPLRLPSPNIENDP
SWDGDLSAHQSLRSDGIEREVPSRVTGNNSQITGSSVWGRIGSASKSNVGSKMGNMTGTS
TLGNEMKENRGEAMDDIHAINQGKGTGMTEIGSKAATIQPFDKSHIGSAHKGGRASTKAL
RTLYVNCIPQKSNRRDALFSHFQKFGEVIDIYIPLNSEKAFVQFSKREEAEAALKSPDAV
MGNRFIKLSWANRDRILDSGQSSGYNTSAQFPFIAKTSAPSKQPNANGGQETPISAQRST
ISAAETPISVAAPVKGLTTNSPKPAPPVKKKVESMELLEELRRKQETLAKKRDDFKRQLD
KFEKQAISNKKGDMTSEQAAKRHKVDIASEADKAAVPSNLIQVTEKILKKNKSEEVHITN
VSKTNSTVLQQSLKNTTSSLQAPLSNRFKLDNRSTSFRILPPLPTDFASVAVIKDHFSQY
GVISTVVIEEPGHTENEGLSPSANCSACITFSTRHFAERAYQSGKCWEGHNLQFKWLTVS
PNSNRDCGIREPTLSPKIAQKADIQLNLVTSGSSSASAEKSTCSVSELAAVGSVENNRDI
EGTNCLPIAQPKLPMDSSPFSPSTSECEKSSFESPNA
NT seq
3174 nt
NT seq
+upstream
nt +downstream
nt
atgaaatttgaggaggcctcgctcaccggctacctcgtcgataacctcaagcctctgact
caggccgatcctgtgattcttgccaagtatgtggtagcattgttgaataaagacaaacct
tcaaaggagctgcagaaactatgcgcagataacttggtggaatttttgggcaacggagca
aaatcattcactgcgaagttgtttcaggcacttgatgatggttcaattgtaaaaatagac
aggaatttggatgttatccagaaattggaaccatctgaggctctgcctatagggggaatt
catcccttgaaaaattcttcactggaggaagtgaatcattcttctacttcttcagaatcg
tccagtgaccccgaagataaagaagttagtgatgatgatgatgaccgcaatcataaacat
cgtagaagagaggctcggccgaattctcttgaaactgatacccaagagcaatcatttagg
agatctaacaggaagcggaacaagccttatgataatggaaaaaggttacttgatactgat
ctccagttaagtgagattcataaagaatacaaccctagtttggataggaatacctcaaca
aaattcgataagcgccgttctgatttggcgccactcctgcgggctccaatagatttaggc
ccgcgaacaagattcagccagccatttcgcaatgatcctggcccacgctatgatttatct
acatcaattggtcgtcctgtaggtagaggaagagcaagaagtactgtcccttggaatcaa
catgattcaagatttaacccacatgacgcccttgattttgcttctcagatggcttcacaa
gggcctgcacatcctaatctctttgttggaacaggcttaccaagtgctgggagtacgcaa
agttcatcttggggtggatttggcttcatccctggaatgtccaatgggattatggatcca
cttaacccacttggcttgcaaggtgctctaggaccaagtatcaaccctcccctgaatctt
ggtatccctcgtcaacgttgtagagactttgaggagcggggattttgcctaagaggggat
atgtgcccgatggaacatggtttgaatcgaatagttgtggaagatgttcagagcctatca
caattcaatcttcctgtttctatttcaaattccaatgctttgggaatccaagctggttca
ggatctgtacctccggcttctgccgcctcaggtcaattggcaaatgctaagatcacatcc
agtaaaattagtagatctggagcaacggaagatgcaccgaaattgaacgatatcccatct
acttctgctggtgttgatgctgatgtatatgaccctgatcagcctttatggaataatgat
cgttctaatgcatctgcttcccccttaaggcttccttcaccaaatattgaaaatgaccct
tcatgggatggtgatttatctgcccaccagagtttgagatctgatggcattgaaagggaa
gttcccagccgtgtcactggtaataattcacaaattactggttcatcagtttggggccgg
attggttctgcaagcaagtcaaatgtaggaagtaaaatgggtaatatgaccggaaccagc
acgcttggaaatgagatgaaagaaaatcgtggagaagctatggatgatattcatgctatc
aatcaaggaaaaggcactggtatgacggagattggttcaaaagcagcaacaattcaacca
tttgataaatcacacataggttctgcacataagggtgggagggcatctactaaagcttta
cgaaccctctatgtaaattgtattcctcaaaaaagtaataggagagatgccctcttttca
cacttccaaaagtttggtgaagttattgatatttatattcctttgaacagtgaaaaagct
ttcgtgcagttctctaaaagggaagaagcggaagctgcccttaaatctcctgacgctgtc
atgggtaaccgcttcattaaactatcctgggcgaatcgtgacagaattctcgacagtgga
caaagtagtggatacaatacatctgcacagttccctttcattgcgaagacttctgctcca
tctaaacagccgaatgctaatggaggacaagaaactcctatctcagctcagaggagtact
atatcggccgctgagacaccaatatctgttgctgcacctgtaaagggtctcaccactaat
tccccaaaaccagcacctcctgtgaaaaagaaggtggagagtatggaacttttggaagaa
cttcgtaggaagcaagagactttggctaagaagcgtgatgacttcaagcgccagttagat
aaatttgaaaaacaagctatttcaaacaagaagggggatatgacttctgagcaggctgct
aagagacataaagttgatatagctagtgaagctgataaagctgcagttcccagcaaccta
atccaagtgactgagaagatattaaagaaaaataagagcgaagaggttcatattacaaat
gtttcaaagacaaattcaactgttctgcaacaatccttgaagaacacaacaagttctctg
caagcgccattgtcaaacagatttaagctggacaaccgttctacttcatttagaattctt
cctcctttacctactgattttgcaagtgttgctgttatcaaggatcatttttcacagtat
ggtgttatctcaactgttgtgattgaagagccaggacatactgagaatgaaggcctatca
ccgtctgcaaactgttcagcttgtataaccttttccactcgccattttgctgagagggct
tatcagagtggaaaatgttgggaagggcacaatttacagttcaagtggttgacggtctct
ccaaattctaaccgtgattgtggcataagagagccaactctgtctcctaaaatagctcaa
aaggctgatattcaacttaatcttgtgacatctggatcatcttcagcaagtgcagaaaaa
tcaacttgcagcgtgtctgagttagctgctgtaggaagtgtagaaaataatcgggatatc
gagggcacaaactgtcttcccatcgctcaacccaagcttcctatggatagctctccattt
agtccatccacgtctgaatgtgagaagagctcctttgaatcacctaatgcataa
DBGET
integrated database retrieval system
