Asparagus officinalis (garden asparagus): 109846606
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Entry
109846606 CDS
T05243
Name
(RefSeq) uncharacterized protein LOC109846606
KO
K06100
symplekin
Organism
aof
Asparagus officinalis (garden asparagus)
Pathway
aof03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
aof00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
109846606
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
aof03021
]
109846606
03019 Messenger RNA biogenesis [BR:
aof03019
]
109846606
Transcription machinery [BR:
aof03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
109846606
Messenger RNA biogenesis [BR:
aof03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
109846606
U7-dependent histone pre-mRNA processing factors
109846606
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Symplekin_C
SYMPK_PTA1_N
CRM1_C
Motif
Other DBs
NCBI-GeneID:
109846606
NCBI-ProteinID:
XP_020271442
LinkDB
All DBs
Position
7:complement(5402028..5440084)
Genome browser
AA seq
1229 aa
AA seq
DB search
MEIHDTSKALEVLKEIGSRPTEGSSLLMPNLLACLKHDDPVVVRQSVTIGTSLFCTVLTE
MVLQLRDSNKVEGWLEEMWSWMLRFKDAVRSLLLELDSPQLKVLAAKFLETCFLLFTSDG
NDGEEGQDHPVLGPNMLAKEAGEVLNLFYELLQSASTLSGSLVTTIINCLASIAIKRPGH
YDSILSVLLEFDPNFETSRDGQASSIQYAVRIALLRFLRCTHPCMFESRDKLVRVARGRY
PGDTTELFIRQMEKLSRGIESNIRDARLSKVDPLPSHSSAPANHLRTRPVIDPADSSAVS
DEMPSMRSQPNASEAPTLPVKVSCDMQNANGAISSSSNSSPGALLAEGEKGAQSLELLLS
QIHPDLLADMVIETMKNLPKDFSALPEGNISMPLNSETSLPSVSSQGWPTVSSAASGQSS
ALPSVFAPAVVGSNGIISPPSDIPSVPNIVNDIKRDPRRDPRRLDPRRAEVPAGSGTIPM
NSKGIDGMQGLIVSLSKPTPLEAPVVDDAPVSLMSKNELEAPECLTGQATEQQITEENLD
ITYGSAERDPSLEGQMPTDLPLSPVYSADQELITSIETVEDESVDGNTLESNEYSSCTSA
RLSSGDGSHDFPAVPDYIELSDEQKMKLSKLAITRLAEDYKSIQASGCDQPHLSILARLV
AQIDADKDLVTFFQKHIILDYHHNKGHDLAMHVLYHLHAVTVSELEDHSSLETHNYEKFL
LAIAKTLLDSLPASDKSFSRLLGEAPSLTKSAFILLEDLCQLHGYENHTIDTSDGDRITQ
GLGALWGLILGRPLYRQICLDIALKCSVHSHDEVRTKAIRLVANKLFLLPYAAESIEKFA
KDMLFSVVDQQVTEAETKDLASSEQMTETGRQETSINGSHYSELGPESGPGIQLSPHSIQ
RQTSLFFALCTKKPSLLRLVFDVYGRASKVVKQSIHRHVPGLVRNLGPSYPELLQIVADP
PEGSENLITLLLQLMTEESTPSADLIASVKHLYDTKLKDVSILIPMLSSLSKDEVLPIFP
QLVDLPLEKFQAALDRILQGSAHTGPALTPVEVLVAIHDIDPVKHGVALKKITDACTACF
EQRTVFTQHVLAKFLSHMVERDHLPMLFMRTVIQAIGTYPALVDFVMGILSKLVNKQIWK
MPKLWVGFLKLVSQTHPHSFNVLLQLPPPQLMTALNKHANLRGPLAAYANQPNIRTSLSR
QTLQVLGLNEPQHASTMPFTSSVHGSTLS
NT seq
3690 nt
NT seq
+upstream
nt +downstream
nt
atggagatccatgacacttcgaaagctctagaggttttgaaggagattggttcgagacct
acggaaggctcatcattattaatgccaaacttgctggcatgtttgaaacatgatgatcct
gttgttgtgaggcagtcagttactattgggacaagtttattttgcactgtcttaacagag
atggtactacagctccgtgattctaataaggtcgaggggtggttggaagaaatgtggtcc
tggatgttacggttcaaggatgcagttaggagcttgttgttggagcttgattctcctcaa
ttgaaggttcttgcagcaaaatttctagaaacatgttttctactgtttacatctgatgga
aatgatggggaagaaggtcaagatcatccagtattaggcccgaacatgttggccaaggaa
gctggcgaggttcttaatcttttctatgagttactgcagtcggcttctacacttagtggt
tctctggtaaccactataatcaactgtcttgcatccattgcaataaaaaggccgggccac
tatgattctattctgtctgtattgcttgagtttgaccctaacttcgaaacttcaagggat
ggtcaagcatcaagcattcagtatgctgtgagaattgctcttttaagatttctaaggtgt
acccatccatgtatgtttgagtcgagggacaagttggtgagggtagcacgaggtaggtac
ccaggggacacaactgagctatttattcgacaaatggagaaactgtcaaggggtatcgaa
agcaacatccgtgatgctcggttgagcaaggttgacccattacctagccacagttctgcc
ccagccaatcatttaaggacgagaccagtaatcgatcctgccgatagttctgctgtttct
gatgagatgccttctatgaggtcacaacccaatgcatctgaagctccaactctgcctgtt
aaagtgtcttgtgacatgcagaatgccaatggtgctatcagttcatcttcaaactcatct
cctggtgctttacttgcagaaggagagaaaggtgctcagtcccttgagcttcttctctca
caaattcatccagatcttctggccgacatggttatagagaccatgaaaaatttaccaaaa
gatttttctgctttacctgaggggaacataagcatgccgctaaattctgagacatcttta
cccagtgtttcttcacaaggttggcctactgtctcttctgcagcttctggtcagtcttca
gctttaccatctgtatttgcaccagcagtagtggggtctaatggaatcatcagtcctcca
tctgatataccttcagtccctaatattgttaatgacattaagcgagacccaagaagggat
cctcgccgtcttgatccgcgtagggcagaagtgcctgctggtagtggcactattccaatg
aactcaaagggaatagatggcatgcaggggctgattgtttctttgagtaagcctactcct
ttggaggcgccagtggtagatgatgcaccagtgtccttgatgtctaaaaatgaacttgaa
gcccctgagtgtttgactggtcaagcgaccgaacaacagataactgaagaaaatttggat
atcacctatggttctgcggaaagagatccctctttggaaggtcaaatgcctactgatttg
ccactctccccagtatattctgctgatcaggagttaattacatccatagagacggttgaa
gatgaaagtgttgatggcaacacactggagtccaatgagtattcatcgtgtacttctgcg
aggttgagctctggagatggtagtcatgattttcctgcagtgccggattatatcgagctg
tcagatgaacagaaaatgaaacttagcaaattggcaattacaaggctggctgaagactac
aagtcgattcaagcttctggctgtgatcagccacacctttcaattcttgcccgtcttgtt
gctcagattgacgctgacaaagaccttgtgacattctttcaaaagcatattattttggat
tatcatcataataaggggcatgaccttgcaatgcatgttctctatcatttgcatgctgtc
actgtatctgaactagaagaccattcttccttggaaactcataattatgagaagtttcta
ctagctattgcaaagaccttactggattcgttgccagcctcagataagtcatttagcaga
cttctaggggaagccccctccttgaccaaatctgcatttatattgttagaggatctatgt
cagttgcatggttatgagaaccatacaatagatacttctgatggtgaccgtattactcag
ggacttggtgccctatggggcttaattttgggaaggccactttatcggcagatttgctta
gatatcgctttgaagtgctcagttcactctcatgatgaagttagaaccaaagctatcaga
ttggtggcaaacaagctctttcttctaccctatgcagcagaaagtattgagaagtttgcg
aaggacatgttgttttcggttgttgatcagcaagttactgaagcggagaccaaagatctg
gcatccagtgaacaaatgacagaaacaggtcgccaggaaacttctattaatggttctcat
tattctgagcttggacctgaaagtgggccgggcattcaattatctccacatagtattcag
cgacaaacttcattattctttgctctttgcacaaagaagcccagtctacttcgtcttgta
tttgatgtctatggaagggcgtcgaaggttgtcaaacagtctatccatcgtcatgttcct
ggtcttgtaagaaatttaggcccatcatatcctgaactgctgcagatagttgctgatcca
cctgaaggaagtgaaaatctcataacactgctattacaactgatgactgaagaatcaaca
ccttctgcggatcttattgcttctgtcaaacatttgtatgatacaaaactgaaggatgtc
tccattctcattccaatgctttcttcactttcgaaagatgaggttttgcctatcttccca
cagcttgttgatctgcctttggagaagtttcaagctgcacttgatcgtattttacagggt
tcagctcatacaggccccgcattaacacctgtggaagttctggttgctattcatgatatt
gatcctgtgaaacatggggttgcgcttaaaaagataacagatgcttgcacggcttgtttt
gagcaacgtactgttttcactcagcatgtcttagcaaaattccttagccacatggttgaa
cgtgatcacctgcccatgctttttatgagaacagttattcaagctattggcacttaccct
gccctggttgatttcgtcatgggaatactttcaaaacttgtgaataaacagatatggaag
atgccgaagttgtgggtgggattcttaaaattagtgtctcagacacacccacattctttt
aatgtcctgttacagttacctcctccgcagctcatgactgctttgaataaacatgctaat
ttacgaggtccccttgcggcttatgccaatcaaccaaacataaggacctcattgtctagg
caaactctacaagtattaggtcttaatgagccacagcatgcatcaactatgccatttact
agttctgtgcatggatcaactttgtcgtga
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integrated database retrieval system
