Asparagus officinalis (garden asparagus): 109847138
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Entry
109847138 CDS
T05243
Name
(RefSeq) U4/U6 small nuclear ribonucleoprotein PRP4-like protein
KO
K12662
U4/U6 small nuclear ribonucleoprotein PRP4
Organism
aof
Asparagus officinalis (garden asparagus)
Pathway
aof03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
aof00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
109847138
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
aof03041
]
109847138
Spliceosome [BR:
aof03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6 snRNP specific factors
109847138
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_Prp19
WD40
WD40_WDHD1_1st
WD40_CDC20-Fz
EIF3I
Beta-prop_EML_2
Beta-prop_CAF1B_HIR1
WDR55
Beta-prop_TEP1_2nd
Beta-prop_WDR90_POC16_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_WDR75_1st
WD40_MABP1-WDR62_1st
Beta-prop_IFT122_1st
ANAPC4_WD40
NBCH_WD40
Beta-prop_TEP1_C
WDR90_beta-prop_4th
Beta-prop_EML
Beta-prop_EIPR1
Beta-prop_SCAP
Beta-prop_Vps41
Beta-prop_RIG_2nd
WD40_RFWD3
Beta-prop_WDR19_1st
Beta-prop_DCAF4
WD_LRWD1
Nbas_N
Motif
Other DBs
NCBI-GeneID:
109847138
NCBI-ProteinID:
XP_020271971
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Position
7:51830926..51837365
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AA seq
384 aa
AA seq
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MYNCILGEAERDEVEDEGVEVSYPFYTEGLKELAEARREIARFSVGRARVRIGRARRRRE
DPDEDEEGEAKEACRAAGEFVLECSEIGDDRPLSGCSFSRDGLMLATCSWSGIAKIWSMP
QVKRTATLKGHRERATDIVFSPVDDLLVTASADRTAKLWKPDGSLLKSFDGHLDRLARVA
FHPSGKYLGTASFDKTWRLWDINTGLELLLQEGHSRSVYGISFHPDGSLAASCGLDALTR
VWDLRTGRSILALEGHVKPVLGVSFSPNGYRLATGSEDNTCRIWDLRKRKCEYTIPAHSH
LISQVKYEPQEGYFLATASYDMKAMVWSGQDFKPVKTLVGHEAKVTGLDIRADGQQIATV
AYDRTIKIWSSRSSGNEKNSMDID
NT seq
1155 nt
NT seq
+upstream
nt +downstream
nt
atgtataattgtatattgggagaggcggagagggatgaggttgaggatgagggagtggag
gtttcgtacccgttttatacggaggggttgaaggagttagccgaggcgaggagggagatt
gcaaggttttcagtgggcagggcgagggtgaggattggacgggcgaggaggaggagggag
gatcccgatgaggatgaggaaggggaggcgaaggaggcgtgtagggctgctggggagttt
gtgcttgagtgtagcgagattggggatgataggccgctttcggggtgctctttttcgagg
gatgggttgatgctggctacatgttcttggagtgggatcgctaaaatatggagcatgcca
caagtaaaaaggactgcaacacttaaaggtcacagagagcgtgctactgatatagtattt
tctcctgttgatgacctcttagtaactgcatccgcagatagaactgcaaagttatggaag
cctgatgggtccctattgaagtcatttgatggccatcttgatcggcttgctcgtgttgca
ttccatccatcaggtaaatacctgggaactgctagttttgataagacgtggagactttgg
gacatcaatactgggttggaattgctcctccaagagggtcatagtagaagcgtgtatgga
ataagctttcatccagatggatctttagctgcatcatgtggccttgatgcacttactcgt
gtctgggatcttcgcacaggaagaagcattcttgccttggaaggccatgtcaagccggtc
cttggagtcagcttctcccccaacggctatcgcttagccactggaagtgaagacaataca
tgtagaatatgggatttgagaaagaggaagtgtgagtacactataccggctcactcccac
cttatctctcaagtgaaatacgaacctcaggagggatactttcttgcaactgcttcctat
gatatgaaagcaatggtgtggtctgggcaagatttcaagcctgtcaaaactttggtcggg
catgaagccaaagttacaggtttagatattagagcagatgggcagcaaatagcaactgtt
gcttatgatcgcacaatcaagatttggtcaagtagaagcagtggaaatgagaagaattca
atggacattgactag
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