Asparagus officinalis (garden asparagus): 109847191
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Entry
109847191 CDS
T05243
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 56-like
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
aof
Asparagus officinalis (garden asparagus)
Pathway
aof03013
Nucleocytoplasmic transport
aof03015
mRNA surveillance pathway
aof03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
aof00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
109847191
09122 Translation
03013 Nucleocytoplasmic transport
109847191
03015 mRNA surveillance pathway
109847191
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aof03019
]
109847191
03041 Spliceosome [BR:
aof03041
]
109847191
Enzymes [BR:
aof01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
109847191
Messenger RNA biogenesis [BR:
aof03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
109847191
Spliceosome [BR:
aof03041
]
Complex C
Other components
EJC/TREX
109847191
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
109847191
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
Cas3-like_C_2
CMS1
YihI
Motif
Other DBs
NCBI-GeneID:
109847191
NCBI-ProteinID:
XP_020272024
LinkDB
All DBs
Position
1:complement(5980755..5987512)
Genome browser
AA seq
423 aa
AA seq
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MGEARDNDAYEEELIDYEEDEEKALDSVGAKAAGDGAKKGYVGIHSSGFRDFLLKPELLR
AIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIDPVAGQVAALV
LCHTRELAYQVCLLSYXXXIKVAVFYGGVHISKHKDILKNECPHIVVGTPGRILALARDK
ELSLKNVRHFILDECDKMLESLDMRKDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKRFM
QDPMEIYVDDEAKLTLHGLVQHYIKLSELEKNRKLNDLLDALDFNQVVIFVKSVSRAAEL
NKLLVECNFPSICIHSGMSQEERLTKYKGFKEGHKRILVATDLVGRGIDIERVNIVINYD
MPDSPDTYLHRVGRAGRFGTKGLAITFVSSTSDSEVLNKVQGRFEVDIKELPEQIDTSTY
MPS
NT seq
1272 nt
NT seq
+upstream
nt +downstream
nt
atgggtgaagcaagagataacgatgcttatgaggaggagctcatcgattacgaggaggac
gaagagaaggcccttgattcagttggggctaaagccgctggtgatggggcaaagaagggc
tatgttggaattcacagctcgggcttcagagatttcttgttgaaaccagagcttctccgt
gctattgtagattctgggtttgaacatccctctgaagtacaacatgagtgcattcctcaa
gccatcttgggaatggatgtaatctgccaagctaaatctggaatgggaaagactgctgtt
tttgttctctcaacccttcagcagattgaccctgttgctggccaagttgctgccctagtt
ctatgccatacgagagaattggcttaccaggtttgccttttgagctatnnnnnnnngatt
aaagttgcagtgttctatggaggtgttcatatttcaaaacacaaggatattctcaaaaac
gagtgccctcatattgttgtcggaactccaggaaggattctggcattagccagagataag
gagctctcactaaagaatgtgaggcattttattcttgatgaatgtgacaagatgcttgaa
tcgcttgacatgcggaaagatgtgcaggagatattcaaaatgactcctcatgataagcaa
gtcatgatgttttcagctactctcagcaaggaaatccgcccagtttgcaagcggtttatg
caagacccgatggaaatctatgtggacgatgaagcaaagcttaccctgcatggtctagta
cagcactacatcaaactcagcgagttggagaagaatcgcaaattgaatgaccttttggat
gctttggacttcaaccaagttgtgatctttgtcaaaagtgtcagcagagcagctgagctg
aacaagttgctagttgagtgcaattttccatcgatctgtatccactcaggaatgtcacag
gaagaaaggttgacaaagtacaaaggctttaaggaaggtcataaaagaattcttgtagcc
actgatctcgttggaaggggaattgatattgagcgtgtgaacattgttattaactacgac
atgcctgattccccagatacttacctgcacagggttgggcgtgctggtcgttttggaact
aaagggttggccatcacatttgtatcgtctacttctgattctgaagttcttaataaggtt
caaggaaggtttgaggtcgacataaaagagttgcctgagcaaattgacacttcaacatat
atgccctcttga
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