Asparagus officinalis (garden asparagus): 109847808
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Entry
109847808 CDS
T05243
Name
(RefSeq) protein CLP1 homolog
KO
K14399
polyribonucleotide 5'-hydroxyl-kinase [EC:
2.7.1.78
]
Organism
aof
Asparagus officinalis (garden asparagus)
Pathway
aof03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
aof00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
109847808
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aof03019
]
109847808
Enzymes [BR:
aof01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.1 Phosphotransferases with an alcohol group as acceptor
2.7.1.78 polynucleotide 5'-hydroxyl-kinase
109847808
Messenger RNA biogenesis [BR:
aof03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
109847808
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CLP1_N
CLP1_P
nSTAND3
AAA_22
ATP_bind_1
SRPRB
AAA_16
MMR_HSR1
ABC_tran
Motif
Other DBs
NCBI-GeneID:
109847808
NCBI-ProteinID:
XP_020272637
LinkDB
All DBs
Position
7:133900411..133902902
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AA seq
321 aa
AA seq
DB search
MASRGKAFSHKEDQVLCSAWLNVSQDPILGTNQRKETMWVRITTLYHQNPGPERGIYPKS
LSHFPFPTLSLSLHPPLSPFSFSSPAPDPRRRPTDEPRRCLPLSFSPPVSTISPSPVETP
SLSSRSCEISRQIGLRVEVGPDTQIRIRLLSGTAEIFGTELPPDTWLSIPPRHKFAVFTW
NDATVELEGISDVEYVADETPMVSYVNVHAILDVRRSRAKAAASSDVGNSQGPRVIVVGP
TDSGKSSLCRMLLSWASKQGWKPTFVDLDIGQGSITIPGFIAATPIEMPLVYFYGHTTPR
PRLIFAGGTGDEDDDDDDQED
NT seq
966 nt
NT seq
+upstream
nt +downstream
nt
atggcttctcgaggaaaggcattctcccacaaagaagatcaagtcttatgctcagcatgg
cttaacgtgtcccaagatccaatcttaggtactaatcagaggaaggaaacaatgtgggtg
aggatcacaactctttatcatcagaatcccgggcccgagagagggatttatcccaaatcc
ctctctcatttcccatttcccactctctctctctctcttcatccccccctctcccccttc
tcattctcttcgccggcgccggacccgcgccgccgccctaccgacgagccgcgccgctgc
ctccctctctctttctctccgccagtatcaaccatctccccgtctccggtcgagactcca
tccctgagttccagaagctgcgagatctcgcgtcaaatcggacttcgggtcgaagtcgga
ccagatacccaaatccggatccgattactctccggcaccgccgagatcttcggcaccgag
ctccctcccgatacttggctctccataccccccagacacaaattcgctgtttttacgtgg
aatgatgcgactgtggaattggaaggcatcagtgatgttgagtatgttgctgatgagact
cctatggttagttatgtaaatgttcatgcgatactcgatgtgcgaaggtccagggctaag
gctgcagcaagcagcgatgtgggtaattcacagggtccaagggtgattgttgtagggccg
actgattcaggaaagagtagcctgtgtaggatgctcttgagctgggctagtaagcagggt
tggaaaccaacattcgtggatttggatattggtcaggggtcgatcactattcctggattt
atagctgctactcccattgaaatgccattagtgtacttctatgggcacacaactcctagg
ccgagacttatatttgcaggtggaactggtgatgaggatgatgatgatgatgatcaggag
gactga
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