Asparagus officinalis (garden asparagus): 109847954
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Entry
109847954 CDS
T05243
Name
(RefSeq) pinin-like
KO
K13114
pinin
Organism
aof
Asparagus officinalis (garden asparagus)
Pathway
aof03013
Nucleocytoplasmic transport
aof03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
aof00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
109847954
03015 mRNA surveillance pathway
109847954
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aof03019
]
109847954
03041 Spliceosome [BR:
aof03041
]
109847954
Messenger RNA biogenesis [BR:
aof03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
109847954
Spliceosome [BR:
aof03041
]
Complex C
Other components
EJC/TREX
109847954
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Pinin_SDK_memA
DUF5037
MS_C
Motif
Other DBs
NCBI-GeneID:
109847954
NCBI-ProteinID:
XP_020272773
LinkDB
All DBs
Position
7:147556375..147561101
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AA seq
418 aa
AA seq
DB search
MASATAEKTAEELRREIAELQRQQREITERLRDPRGIRRSGASVTPAGPTGPRKRGVMAR
PVFRYPILRSAGANGVVHAAVVKLEDGEIKEGAGEPKDTREDLAPESGAAPAGENGKPMP
NKQVNSGFRKDGNPRMRKMDYDALPTEPVPRVLPKDEDPRLVKRNRRMLGQLLGTLEKFR
EEDKHLSSTEAYMRRSDSLRRAEEKAREESERLRQQEREQIAEKRRRDLTLRARVAAKAE
QKKMELLFILWSEHHKKLSNFLRTKTEPPIYYMPVKPLIEDAATVERKKEQVFHEWKTTR
RAELSEYQKQIEENYISNVDEELEKWQSLRNRQRSNNNNNVNLQETMDKELETHRLEHGP
KPRRIPGSNDEEEDVEDIVAEDELMDEVLGVVAERVDGGNVSKLAEGGNASPNPVEVQ
NT seq
1257 nt
NT seq
+upstream
nt +downstream
nt
atggcgagcgcgacggcggagaagacggcggaggagctccgcagagagatcgccgagctc
caacgccagcaaagggagatcaccgagaggcttcgagatccccgcggaatccgacgctcc
ggcgcctccgtaacgcccgcgggccccaccggccctcggaagcgcggcgttatggctagg
ccggtgttcagatatccgattttgagatcagccggcgcgaacggcgttgttcatgcggct
gttgttaagttggaagatggagaaatcaaagaaggtgctggtgaaccaaaagataccaga
gaggatttggcaccagagtcgggggctgctccagctggggagaacggcaagccaatgcca
aacaaacaggtcaatagtgggttcagaaaggatggaaatccacggatgagaaagatggac
tatgatgctttgccgacagagcctgtaccgagggttttgccaaaggatgaggacccaaga
ttggttaagcgtaacagaagaatgctaggacagctcctagggacactagagaaattccga
gaagaagacaaacatctgtcatccactgaagcgtacatgcgcaggtcagactcattacgg
cgggctgaagaaaaggcccgagaggaaagtgaaaggctgcggcaacaagagagggaacaa
attgctgagaaacgtaggcgtgatttgactttacgagctcgtgttgctgctaaggcagag
caaaagaagatggagctgctgtttattctttggtctgagcatcataaaaagctgagcaat
ttcttaaggactaaaacagaacctccaatatactacatgccggtcaagccattaattgag
gatgcagctactgttgaacggaagaaagaacaggtattccatgaatggaagaccacaaga
agagcagagctttccgaataccaaaaacaaatcgaagagaattacatatcaaacgttgac
gaagagctcgagaagtggcagagcttgaggaacagacaaagatcaaacaacaacaacaat
gttaatctgcaagagacgatggacaaggagctggagactcacaggcttgagcacggtccc
aagcctcgcagaatcccaggaagcaacgatgaagaggaggacgttgaggatattgttgct
gaggacgaactcatggacgaggtccttggagttgtcgctgagagggttgatggtggtaat
gtttcgaaattggctgaagggggtaatgccagcccaaaccctgtagaggtgcagtag
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