Asparagus officinalis (garden asparagus): 109847960
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Entry
109847960 CDS
T05243
Name
(RefSeq) protein RRP6-like 3
KO
K12591
exosome complex exonuclease RRP6 [EC:3.1.13.-]
Organism
aof
Asparagus officinalis (garden asparagus)
Pathway
aof03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
aof00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
109847960
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aof03019
]
109847960
Messenger RNA biogenesis [BR:
aof03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Exosome cofactors
109847960
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Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
Motif
Other DBs
NCBI-GeneID:
109847960
NCBI-ProteinID:
XP_020272779
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Position
7:complement(148159744..148164375)
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AA seq
374 aa
AA seq
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MVSREETKTLTLLCIAAAAASLIAVSACYRGRRREQRRRPAMPTGVFEEKPQNRFKRVLA
DNSYSPFKHYKREGKEKEISLKVHPYEEEIDFLMENPPTSMEFIVNRELSAMGDSYVWVD
TEDQLQTVVSLLSKEQAFAVDTEQHSLRSFLGFTALMQISTQKEDFLLDTIALHDAMGIL
RPVFADPSICKVLHGADNDVLWLQRDFHIYVVNMFDTAKACEVLSRPQKSLAYLLEAYCG
VSTDKRFQREDWRLRPLSPEMIQYARTDAYYLLYIADCLSSELRNENLACPDDKFNLFSE
ATRRSNMVCLQLYAKDIESTPGASAAASIYSRNLHIQGLTPLRTSEIKELLWKLCAWRDL
MQTVEGNEATKKFY
NT seq
1125 nt
NT seq
+upstream
nt +downstream
nt
atggtgagcagagaagagaccaaaaccctcactctcctctgcatcgctgcagcagcggcg
tctctaatcgccgtttcggcatgctaccgcggtcgcaggcgggagcagcgccgccgtccg
gcgatgccgactggagttttcgaggagaagcctcagaatcgtttcaagcgcgtgctcgcc
gataactcctactctcctttcaagcactataagcgagagggcaaagaaaaagaaatctct
ttgaaagtgcatccatatgaagaagagatcgactttttgatggagaaccctcccacctca
atggaatttattgtaaatcgtgaactttcagctatgggtgattcctatgtttgggtagac
acagaggatcaactacagactgtagtgagcttacttagcaaggaacaggcctttgctgtc
gatacggaacaacatagtttgcggtcatttcttggatttactgctctaatgcagatttca
actcaaaaggaggatttcctactggacacaattgctttacatgatgcaatgggcattctc
cggcctgtttttgctgatccttctatttgtaaggtattgcacggagctgataatgatgtt
ctttggcttcagagagactttcatatatacgttgtgaacatgttcgatactgctaaggca
tgtgaggttctatcaagaccacagaaatcattggcatacttgcttgaggcatattgtgga
gtatcaactgacaagagattccagcgtgaggactggagattacgtccgttatcaccagag
atgattcaatatgctcgtactgatgcttattacttgctatatattgctgattgcttatct
tctgagctcagaaatgaaaatcttgcttgtcccgatgataaattcaatttattctccgag
gccactcgccgttcaaatatggtttgcttgcagctttatgcaaaagatatcgaatctact
cctggagcttcagctgcagcatctatatactctcgaaatttgcacattcaaggacttaca
cccttgagaacttctgaaattaaagaacttctatggaaattatgtgcatggagagactta
atgcaaactgtggagggtaatgaggcaacaaagaagttctactag
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