Asparagus officinalis (garden asparagus): 109847974
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Entry
109847974 CDS
T05243
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 52B-like
KO
K11594
ATP-dependent RNA helicase DDX3X [EC:
5.6.2.7
]
Organism
aof
Asparagus officinalis (garden asparagus)
Brite
KEGG Orthology (KO) [BR:
aof00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aof03019
]
109847974
03041 Spliceosome [BR:
aof03041
]
109847974
03036 Chromosome and associated proteins [BR:
aof03036
]
109847974
Enzymes [BR:
aof01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
109847974
Messenger RNA biogenesis [BR:
aof03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
109847974
mRNA cycle factors
Common to processing body (P body) and stress granule
109847974
Spliceosome [BR:
aof03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
109847974
Chromosome and associated proteins [BR:
aof03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
109847974
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
109847974
NCBI-ProteinID:
XP_020272796
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All DBs
Position
7:complement(149351554..149356825)
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AA seq
414 aa
AA seq
DB search
MACAQTGSGKTAAFCFPIISGIMKGKEFGQRGGRTAYPLGLILSPTRELSVQIHEEARKF
AYQTGVRVVVAYGGAPISQQLRELERGVDILVATPGRLVDLLERARVSLQMIKYLALDEA
DRMLDMGFEPQIRKIVEQMDMPPSGVRQTMLFSATFPKEIQRLASDFLSGYIFLSVGRVG
SSTDLIVQRVEFVLQSDKRSHLMDLLHAQRANGAHGKQALTLVFVETKKGADSLEHWLCM
NQFPATTIHGDRTQQEREYALRSFKSGQTPILVATDVAARGLDIPHVAHVINFDLPNDID
DYVHRIGRTGRAGKSGLATAFFNEDNANLARPLAGLMQESNQEVPAWLARYAVIFGGNPP
LIRLVVLSITSTAAMDMLALELPVLGTESIPLPQNQLDSWFLVLCSVRVCTFST
NT seq
1245 nt
NT seq
+upstream
nt +downstream
nt
atggcgtgtgcgcagactggttccgggaagacggcggcgttttgttttccgatcattagt
gggattatgaaggggaaggagtttgggcagaggggagggaggactgcttatccgttgggg
ttgatcctgtcaccgacgagggagctgtcggtgcagattcacgaggaggcgaggaagttt
gcttatcagactggggttagagtggtggttgcctatggcggtgctccgattagccagcag
ttgcgtgaactcgaaaggggtgttgacattcttgtcgcaactcctggacgtttggtggat
ttgcttgaaagggctagggtttcattacagatgattaaatatttggcactagatgaggca
gatagaatgctcgacatgggttttgagccgcagatccgaaagattgttgaacaaatggac
atgcctccatcaggtgtcaggcagaccatgttgttcagtgccacattcccaaaggagata
cagaggctggcttctgattttctttctggttacatctttctgtccgttggaagagtgggc
tctagtactgacttgattgttcaaagagttgagtttgttctccagtcagacaagagaagc
catctcatggatcttcttcacgcgcaaagagctaatggagctcacggaaagcaagctttg
actttggtctttgtggagacaaaaaaaggagctgactcattagaacattggttatgtatg
aatcaatttcctgcaactactattcatggtgatcgaacacagcaggaaagggaatacgct
ctgagatcattcaaaagcgggcaaactccaatcctagtagcaacagatgttgcagctcgt
gggctcgacatcccccacgtagcacacgtcatcaacttcgacctccccaatgatattgac
gactatgttcaccgtattggaagaacaggaagagcagggaagtcaggcctagccaccgcc
ttcttcaacgaagacaatgccaacttggcgagacccttggctggtctcatgcaggagtcc
aatcaggaggtgccagcttggctcgcccgttatgccgtgattttcggagggaatcctcct
cttataagactggtggtgctgtcgataacttctacggcggcgatggatatgctagcgctg
gagttgccagtgcttgggactgagtcaatcccactgcctcagaatcaactagatagttgg
tttcttgttctttgctctgttagggtttgcacatttagtacttga
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