Asparagus officinalis (garden asparagus): 109848059
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Entry
109848059 CDS
T05243
Name
(RefSeq) Fanconi anemia group J protein homolog isoform X1
KO
K15362
fanconi anemia group J protein [EC:
5.6.2.3
]
Organism
aof
Asparagus officinalis (garden asparagus)
Pathway
aof03440
Homologous recombination
aof03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
aof00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
109848059
03460 Fanconi anemia pathway
109848059
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
aof03400
]
109848059
Enzymes [BR:
aof01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
109848059
DNA repair and recombination proteins [BR:
aof03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-B complex
109848059
FA (Fanconi anemia) pathway
Downstream FA components
109848059
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C_2
DEAD_2
HBB
RT_RNaseH
Motif
Other DBs
NCBI-GeneID:
109848059
NCBI-ProteinID:
XP_020272955
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All DBs
Position
7:complement(83152685..83171630)
Genome browser
AA seq
1285 aa
AA seq
DB search
MDPSPPPLPQNPNPNPNPKQVYQISGVPVEFPYKPYGTQLAFMGRVISTLDRAKRQGHCH
ALLESPTGTGKSLSLLCSALAWQRHHPRRFPQCNPKPNPNSQPSTAPDPLVHGGGFIPEP
ETSSMNLEQGKAVMSARDQKKMVMPKIYYASRTHSQISQVIREYRKTSYRVPMAVLASRK
HYCTNKHVCRTENIDENCKLLLKDEGAGCPEFKNAHKVKSHSSLQKGGTYEVHDIEDLVK
IGRTVKGCSYFASQTLAAEAQIVFCPYSYIVNPVVRRAMDIDIKGSIVILDEAHNIEDMA
RDAGSMDVEEDVLHILQMELGQLCMDESLALIYRPLYDTIQGIIGWIGDRKNNLQKREFE
HYSSFWTGDKAINELQLAGITLQCFPVLQECAAKAIKAVSDAESEGAHLSGTSAITLETI
FSSLGYFFSGNGCHVLDYQLVLQRHVKRDSSNTASGWTCSLSLWCLNPSVVFRDIAHLCL
SVILTSGTLSPMGSFASELGVQFEACMEAPHVIDVESQLWASVITSGPGNCQLNASYKTA
DGYAFQDSLGASLEEICKIVPGGALVFFPSYKLLEKLRLRWCQTGQWSRLNAQKSVFIEP
RGTDEFESALGEYYDCIRGQGRTFRGKTKNGQKRFSTHINPKASSETCTSGAAFLAVCRG
KVSEGIDFADENARVVVVVGIPFPNTNDIQVVLKKRYNDTYKPSKSLLSGSDWYCHQAFR
ALNQAAGRCIRHRSDYGAVILLDERFKEKRNLNYISKWLRNSIKQYDSFDESMAGLRSFF
EQKRLIQKGRESELVTSDPDIDNLISSEQNLTEVNTQKKNQKQKKPNGGRRKIIPDDKVG
APKTFPKDGSPSATKSQCLTTSASELNEKVLSQHVFSAPICIASPENTLEQSTVINSTAK
GYQASKPDGFSKYDNSFSGLMESCNQLLDRQSFSCCTFSNGMSSEDARTTTISPERVTYL
DVSDTEQESTLNKSVNSYSQRKRKLMDARDKNRSQVKSLNYLDSESCYKFDRISAKKITT
YASRRIQASFADSCSDGKPQLHGLSMQTNMGMLPILDDTLAEKKLHICCLVCENPLGLLE
NNFIVPCRSTSLSKVYLAYILDYEPKGYSFLECLSSILKKEINVIISDTSSVDQRMFKTG
INENVLQHDIWCEEDGCVFRTTLCPFCTDRSACLGVEIKATDTSNVHLLNKVVFFADHLY
IKDEQTPKQEATLRTCVNNLKPDSGSVDIEKYAYNSQHDSVLAKREKSKVRNDAFTLDIL
IFLLITTIISFHLAAQIAQEMIKLH
NT seq
3858 nt
NT seq
+upstream
nt +downstream
nt
atggatccatctcctcctcctcttccccaaaaccctaaccctaaccctaaccctaaacaa
gtctaccagatctccggcgtccccgtcgagttcccctacaagccctacggcactcaacta
gcgttcatgggccgggtaatctcgacattggaccgggccaagcgtcagggccattgccat
gcccttctcgagtcgcccacaggcaccggcaagtccctctctcttctttgctccgccctc
gcttggcagcggcatcacccccgtcgattccctcaatgcaaccctaaacctaaccctaat
tctcagccttctactgccccggacccgctggtccatggtggagggttcatccccgaaccg
gagacgtcatcgatgaatttggagcaagggaaggcagtgatgagcgctagggatcaaaag
aagatggtgatgcccaagatttattatgcctcgagaacacattcacagataagccaagtg
attcgagagtacaggaaaacatcatatcgtgtgccaatggcagttcttgcatcacggaag
cactattgtaccaataagcatgtatgcaggacggagaatatagacgaaaactgtaaactc
ctcctaaaagatgaaggagctgggtgtcctgaatttaaaaatgctcacaaagtcaaaagt
cattcctctcttcagaaaggtggcacttatgaggttcatgacatagaagaccttgtaaag
attggccgaactgtgaaagggtgttcctattttgcatcccagacattagcagccgaagct
caaatagttttctgcccgtacagctacattgtaaatccagttgttcgaagagcaatggat
atagacatcaaaggatccattgtgattcttgatgaagcccacaatatagaggacatggca
cgtgatgctggaagtatggatgttgaggaagatgttctccatatactgcaaatggaatta
gggcagctctgcatggatgaaagccttgcattaatatatcgacctttatatgacacaatt
caggggattattggctggataggtgacaggaaaaacaatttacagaagcgagaatttgaa
cattactcttcattttggacaggggataaagccatcaatgagcttcaattagctggaata
actttgcaatgctttccagtattacaagaatgtgctgcaaaggcaattaaagcagtttca
gatgcagagtcagaaggagcacatttaagtggcacctcggctatcacattggagacaatt
ttctcctcattgggttactttttctctgggaatggctgccatgtgcttgattatcagctt
gtattgcagcgacatgtgaaaagagatagcagtaatactgcaagtggctggacttgctcg
ttaagcttgtggtgcttaaacccctccgttgttttcagagatattgcacatctctgtctt
tcagttatcctaacatctggaacactgtctccaatgggctcttttgcatctgaacttggt
gtgcaatttgaagcttgtatggaagcacctcatgtaattgatgtggaatcacagctttgg
gcatcagtgatcacctctggacctggaaactgtcagttaaatgccagctacaaaactgct
gatggttatgcttttcaggactcactgggagcttctctggaagaaatttgtaagattgta
ccaggcggtgctcttgtcttttttcctagttataagcttctggaaaagctacgtctccgt
tggtgccagactggtcaatggtctcggctaaacgcacaaaagtcagtcttcatcgagcca
agagggacagatgagtttgaatcagctttgggggaatattatgattgcattcgtggacaa
ggtagaacttttcgtggcaaaaccaaaaatggacaaaagcgattttctacacacattaat
ccaaaggcctcttcagaaacttgcacgagtggagctgctttccttgcagtctgccgagga
aaggtatctgaggggatagattttgctgatgaaaatgcaagagtagttgtagtagtgggc
attccatttccaaatacaaacgacattcaggttgtgctgaagaaaagatataatgataca
tacaaaccatccaaaagtctactaagcggaagtgattggtactgtcaccaggcattccgt
gctctgaatcaagctgcaggtcgctgcattaggcacaggtcagattatggtgctgtaatt
cttctagatgagcgatttaaggagaagcggaatctcaattacatttcgaagtggttaagg
aactcaatcaaacagtatgacagttttgatgagtcaatggcgggactgcggagtttcttt
gaacagaaaaggttaattcagaaaggcagggaaagcgagcttgttacctctgaccctgac
attgataatctaatttcttcagaacagaatttgactgaggtaaatacacagaagaaaaac
cagaaacaaaagaagcccaatggtgggagaaggaagataattcctgatgataaagtcggc
gcaccaaaaacatttccaaaggatggttctccctctgcaacaaaatctcagtgcctcaca
acatcagcaagcgagttaaatgagaaagtcttgagccaacatgtgttttctgcaccaata
tgtatagcctctcctgagaacactttggagcaatccacagtcataaacagcactgcaaaa
gggtatcaggcctcaaagcctgatggattttctaagtatgacaactcattttcgggactg
atggagtcctgtaatcagcttctagatagacaatccttttcctgctgtacattttcaaat
ggaatgtcttctgaagatgcacgtacaacgacaattagccctgaaagagtaacatatcta
gatgtcagtgatactgaacaggaatcgacattaaataagagcgtgaattcttatagccaa
agaaaaagaaagctaatggatgcaagagataaaaaccgttctcaggttaaaagtttgaac
taccttgattcagaatcatgctacaagtttgaccgcatcagtgccaagaaaataactaca
tatgccagtcggaggattcaggcttcttttgccgacagttgttcagatggcaagcctcaa
ttacatggattatcaatgcaaactaacatgggcatgctacctatattagatgatacatta
gcagaaaagaagctacatatctgctgtttggtctgtgaaaatcctttgggattgcttgag
aacaattttattgttccatgtagatcaacatcattgtctaaggtctacttggcatatatc
ctggattatgagcctaagggttatagcttcttagagtgtctttcaagtattctaaaaaaa
gaaataaatgttataatttctgatacttcaagtgttgatcagcgcatgtttaagaccgga
attaatgaaaacgtactgcagcatgatatctggtgtgaagaagatggatgtgtgttcagg
actactctttgccctttctgcactgaccgtagcgcctgtcttggagtagaaattaaagca
actgatacttcaaatgtacacttactaaataaggttgtcttctttgctgatcacttgtat
attaaggatgaacaaacgccaaagcaagaggcgacgctgcgcacttgtgtaaacaacctc
aaaccagactcaggttcagttgatattgagaaatatgcatataattctcagcatgattct
gtattagcgaaaagagaaaaatcaaaggttagaaatgatgcttttactcttgacatacta
attttcttattaattactaccatcatttcgtttcacttagcagctcagattgcccaggaa
atgattaaacttcactaa
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