Asparagus officinalis (garden asparagus): 109848086
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Entry
109848086 CDS
T05243
Name
(RefSeq) ATP-dependent RNA helicase DEAH13-like isoform X1
KO
K14780
ATP-dependent RNA helicase DHX37/DHR1 [EC:
5.6.2.6
]
Organism
aof
Asparagus officinalis (garden asparagus)
Brite
KEGG Orthology (KO) [BR:
aof00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
aof03009
]
109848086
Enzymes [BR:
aof01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
109848086
Ribosome biogenesis [BR:
aof03009
]
Eukaryotic type
90S particles
Helicases
109848086
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
DHX37_C
Helicase_C
HA2_C
HA2_N
DEAD
AAA_22
nSTAND3
ATPase
PhoH
AAA_16
TsaE
AAA_32
Motif
Other DBs
NCBI-GeneID:
109848086
NCBI-ProteinID:
XP_020272990
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Position
7:48057601..48067129
Genome browser
AA seq
1317 aa
AA seq
DB search
MEATMSNSNQIEGIGDGWDSGMDGSNALILPEKKKSKIKETGKGLKKRKDKQAPPVSKSK
LKKMKKLLEEKEKKLLQNKSIEILKKHKLWDGAYSLLQSSGTIGHADTVKEKRRRAVQLS
KAGLEVPEDLSWLKSKKKKSIPCDEEAVLNHDFGQSYSRNTLMDNDAKVVECLEVDDRKH
SQAAETRLEEVSKISTISDGRSNPVTPPPECIHNDSDICVGKEQNDAPSVLGSCKEGKDT
RSQDQNVCNSIVKDMEITSNNKFQHLTAPVVVHVSRPKDIELKRRDLPIIMMEQEIMEAV
NEHSIVILCGETGCGKTTQVPQFLYEAGFGSKNCNDRKGIIGVTQPRRVAVLATAKRVSF
ELGYCLGKEVGFQVRHDKRIGDRCSIKFMTDGILLREVQSDFLLRRYSVIVLDEAHERSL
NTDILVGMLSRVIKLREVTIDKLYLEQQEKILSGVEIDPDKMITKLKIILMSATLRVEDF
ISGKKLFHETPPILEVPVRQFPVTIHFSKKTHEDYLGQAYKKVMLIHKKLPPGGILVFVT
GQREVEFLCKKLRKASKQLITNNSKRNSDNDGTANLDMEMKDIHEAFEISTTDQQTDRFS
SFEEDDNFPEMDSDSSNSETDSDIGDDTDTETTSEKTDLVLDLLGDSRGLLSLKASFEAL
AGKSCNQNSKEEPTAPMHSKEEETQFVPSTMGEQAEPTPVGPLYVLPLYAMLPASSQLRV
FEEVPEGERQVVVATNVAETSLTIPGIKYVVDTGKEKVKHYNIANGMETFEVQWISRASA
AQRAGRAGRTGPGHCYRLYSSAAFSKDDLFPEFSCPEISKIPVDGVVLLMKSMGIDKVAN
FPFPTPPDTRALVEAEHCLKALQALDMHGKLTPIGRAMAQYPLSPRHSRMLLTVIQIMKN
QRAYARANLVLGYAIATASALSFPNPFKMQFDGNHGKSDGLNQEEISQDQESKKRLKKEK
VLVKEARARLRNLSSDALTFAYALQLFELAENQFEFCQKHSLHVKTMEDMSKLRKQLLQL
IFYQSKFSEEFGWDHGSAEEVEMTWRVSSIKHPLLMNEEELLGQAICAGWADRVAKRVRK
ISESSDKVRAVRYQSCALDDTIYLHRWSSVSQSAPEFVVYTELLQTNRPYMHGATSVKSE
WLVKYASSLCSFSAPLTDPKPYYEPLSDEVLCWVSPVFGRHNWQLPLHSLPIKNDGLRVS
VFACGLLEGSVLPCMRTAQKLLAMSPSNLLKPEALGQRRVGDLLNGLRIGSRRIDSRARL
RDAWNENPRHLYSEIKNWFQERFHGQFEELWEQMHHEVLEGPELFRGRAKKENKKPK
NT seq
3954 nt
NT seq
+upstream
nt +downstream
nt
atggaggctaccatgtctaattctaatcaaatagaagggattggagatggttgggactca
ggcatggatggaagcaatgcacttattttacccgagaagaaaaagagcaaaattaaagaa
acgggaaagggcttgaagaagagaaaagacaagcaagcaccaccagttagcaaaagcaaa
ctgaagaaaatgaaaaagttgctggaggagaaagagaagaagctgttgcaaaacaaaagc
attgagattttaaagaagcataagttatgggatggggcatattcacttttacaatcttcg
ggaacaattggtcatgctgacactgtgaaggagaagcgtagaagagcagtgcaactctct
aaagcaggactggaagtgcccgaggatctttcttggttgaaaagcaagaaaaagaagagc
attccttgtgatgaggaagctgttttgaaccacgatttcggtcaaagttattcacgcaat
acacttatggataatgatgcgaaggttgtggaatgtctggaagttgatgatcgcaagcat
agccaggctgctgaaacccgtttagaggaagttagtaaaatctcaactatttcagatggg
agatcaaatccagtaacaccgcccccagaatgtatacataatgattcagacatatgcgtt
ggtaaagagcagaatgatgctccttctgttctgggtagttgtaaggaaggaaaggacacc
cggtctcaggaccagaatgtttgtaattcaattgtgaaggacatggaaatcacttcaaat
aataaatttcaacatctgactgctcctgttgtggtgcacgtatcgcggccaaaggatatt
gaactgaagaggagagatcttccaataattatgatggagcaggagataatggaagctgta
aatgagcattcaattgtaattttatgtggagaaacaggatgtggtaaaactactcaagta
cctcagttcttatatgaagctggttttgggtcaaaaaattgtaatgaccggaaaggaatc
attggtgttacacaaccgcgacgtgtagctgttcttgccactgccaagagagtatccttt
gagttgggttattgtcttggaaaggaggttggttttcaagttaggcatgataaaaggata
ggagatcgttgctctatcaagttcatgactgatggaattttacttcgagaagttcagagt
gacttcttactgaggcgttactctgtaattgtcctggatgaggctcatgagagaagtttg
aacacagatatacttgtcggaatgctatctcgagttataaaacttcgcgaggttacaata
gataagttatatttggagcagcaggagaaaatactttcaggcgtagaaattgaccctgac
aagatgatcactaaattaaagatcatacttatgagtgctacacttagagttgaagacttc
atttctggcaaaaaattatttcatgagaccccacctattctggaagttccagtaagacaa
tttccggtgactattcatttctcaaagaagacacatgaggattatttaggtcaagcttat
aagaaggttatgttgatccacaagaagctaccacctggaggcatactggtatttgtcact
gggcaacgggaagtggagttcctgtgtaagaagctaaggaaagcatcaaagcaattaatt
acaaacaattctaaaagaaactcagataatgatgggactgcaaacctggacatggaaatg
aaggatatccatgaagcatttgagataagcactacagaccagcagactgacaggtttagt
tcttttgaagaggatgataacttcccggagatggattctgattcatctaactcagaaaca
gacagtgatattggggatgatactgatactgaaacaacctcagagaagaccgatttagtt
ctggatcttttaggagattctagaggtcttttgtcattgaaggcttcttttgaagcctta
gctggaaaatcatgcaaccaaaattctaaagaagaaccaactgcaccaatgcattccaaa
gaagaggagactcagtttgtcccttccactatgggtgaacaagcggaacctactcctgtt
ggtcctttgtatgtgttacccctttatgcaatgctacctgcttcttctcagcttcgggta
tttgaagaggtgcctgaaggagaaaggcaagtggtggttgctacaaatgtggctgagact
tctctgacaattccgggaataaaatatgtggttgacacgggaaaagagaaggtcaagcat
tacaacattgccaatgggatggaaacatttgaagtccagtggataagcagagcctcagca
gcccaacgtgcagggagagctggaagaactggacctggccactgttatcgcctctactca
tcggcggccttcagtaaagatgatttgtttccagagttttcatgtcccgagatctctaag
attcctgttgatggtgttgtccttctaatgaaatctatgggcattgataaggttgcaaat
tttccattcccgactcctccagacaccagagccttggttgaagcagaacattgcttgaaa
gctcttcaagcacttgatatgcacggaaagcttacaccaattggaagggcaatggcacag
tatccgctgagtcctcgtcactcccgaatgcttcttacagtaatccaaattatgaagaat
cagcgagcctatgcccgtgcaaacctagtgctaggatatgccattgccacagcatcagct
ttaagctttccaaatccttttaagatgcagtttgatggaaaccatggcaagtcagatggt
ttgaaccaagaagaaatttcgcaggaccaagagtcaaagaagaggttgaagaaggaaaaa
gttttggtaaaagaagctcgtgccaggttacgtaatctcagcagcgatgcattaactttt
gcttatgccttacagttgtttgaacttgcagaaaaccaatttgagttctgccagaaacat
tctcttcatgtgaagacaatggaagatatgtccaagttgaggaaacaactgttacagctg
atattttaccagagtaagttctctgaggaatttggatgggatcatggaagtgctgaggag
gtagaaatgacatggagggttagttccattaagcatccattactaatgaatgaggaagag
ctattaggtcaagctatatgtgctggttgggctgatagagttgcaaagcgtgttcgaaag
atttcagaatcatcagataaagtacgggctgttcgataccagtcatgtgccttagatgat
actatttatcttcatcgttggtcgtcggtatcacagtccgctccagagtttgtagtatat
actgagctccttcagactaatagaccatatatgcatggagcaaccagtgtgaaatcagag
tggctagttaaatatgctagttctctatgcagtttctctgcaccacttactgatccaaag
ccttattacgaacctctgagtgatgaagtattgtgttgggtgagcccagtctttggacgt
cataattggcagctccctttgcattctttgcctattaagaatgatggacttcgagtgtca
gtttttgcttgtggattgctagaaggttctgtgctgccatgcatgagaacggcacaaaag
ttgttggctatgtcgccttcaaatttattgaagcctgaagcattgggtcagagaagggtt
ggagacctgctgaatggattaaggattggatcaagaagaatcgatagtcgtgcacggttg
agagatgcttggaatgagaatcctcgacatttatattcggagatcaagaattggtttcaa
gaaagatttcatggtcagtttgaggagctctgggaacaaatgcatcatgaagttcttgaa
gggccagaacttttccggggaagagcaaagaaagaaaataagaagccaaaatga
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