Asparagus officinalis (garden asparagus): 109848140
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Entry
109848140 CDS
T05243
Name
(RefSeq) uncharacterized protein LOC109848140 isoform X1
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
aof
Asparagus officinalis (garden asparagus)
Pathway
aof03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
aof00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
109848140
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aof03019
]
109848140
03400 DNA repair and recombination proteins [BR:
aof03400
]
109848140
Enzymes [BR:
aof01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
109848140
Messenger RNA biogenesis [BR:
aof03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
109848140
DNA repair and recombination proteins [BR:
aof03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
109848140
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
RQC
Helicase_C
HTH_40
HRDC
RecQ_Zn_bind
ResIII
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
109848140
NCBI-ProteinID:
XP_020273082
LinkDB
All DBs
Position
7:20518483..20538280
Genome browser
AA seq
906 aa
AA seq
DB search
MEQVLKTYFGFSQFRPYQKEIIDQVLNGRDSLVVMATGSGKSLCYQIPPLVRKKTAVVIS
PLLALMQDQVMSLKQRGIKAEYLGSTQMDKGIYSEAEKGTFHLLYMTPEKACSLPHRFWT
NLLDVGICLLAVDEAHCISEWGHDFRKEYKKLHMLRNILPDVPFIALTATATGKVQRDIV
HSLQMSDPYIAIGSFDRQNLFYGVKILSRSTSFVDELVTEVSKYSNNGGSTIIYCTTIKD
SEQICDSLKDAGIKTGIYHGQMGAKAREQSHKSFIRDELQVMVATIAFGMGIDKPNIRCV
IHYGCPKSLESYYQESGRCGRDGLASICWLYYSRSDFGKADFYCSEAQSESQKKAIIDSF
RAAEKYCLLATCRRKFLLQYFGEETTNACGKCDNCTRSKSERDLSREALLLLSCIQSCGD
RWGLNMPVDVLRGSRSKKILDNDFDKLSLHGLGKGYSSNWWKALAGLLIAHDYLKENTQD
IYRTVSVSPNGKKFLSCANSVHQSPLVLAITSEMIDEEEHGGQQKKVGDLNNSTTLEYED
FSEAETKLYRMLLDFRMKLAQDNGTAPYAICGDETIVKIAKIRPSTRARLANIDGVNQHF
VSKYGGSLLESICQASEELKLPLDGEAPVLQAASTRKVLATSERKLVTPAKLNAWKLWQN
EEVLIPQIASTYGIKEQTVTTYILEVARDGHEVNWARFCNEIGLTSEVASQIRFAVTKVG
RDRLKPIKEELPEAVSYEQIKTLLAMEDLNVSTEGLGWKSNSSDSAPVEIDSSACTRGDR
THEPGSWRSFTEKRAGSHSETNGSQTLTPPSCETIAGTKQPRNDESLLDECPSVKHHKAN
EGENCLDGLEATESTILEWIAEHDGVLLSEITDHFGGSEREFIVNLVGCLEGKYVIFKKN
DMYRAL
NT seq
2721 nt
NT seq
+upstream
nt +downstream
nt
atggaacaagtgttgaagacatattttgggttctcccagttccgaccgtaccagaaagaa
atcatcgatcaagtactaaacgggagggattctttagtggtcatggccactggaagcgga
aaatctttatgttaccagattcctccactggttagaaaaaagactgctgttgtgataagc
cctcttctagcattgatgcaagatcaggtcatgagtttaaagcaacgtggtataaaagct
gagtatttaggaagtactcaaatggacaaaggtatttactctgaagctgagaaaggtacc
tttcatttgctatacatgaccccggagaaagcttgctcacttcctcataggttttggact
aacttgttggatgttggcatttgtctcttggctgttgatgaagcacattgcatatcagag
tggggacatgatttcaggaaagaatacaagaagttgcacatgctacgtaatattcttcca
gatgtaccatttattgctttaactgccactgccactgggaaggtacagagagatattgtt
cactccttgcagatgagtgacccttacattgcgatcggctcatttgatcgccagaatcta
ttttatggtgtcaagattttgagtcgatcaacatcattcgtagatgagcttgtaactgaa
gtctcaaaatacagtaacaatggtgggtcaactatcatatattgtaccactattaaagac
tctgaacagatctgcgactcactgaaagatgctggaattaagactggaatttatcacggt
caaatgggagctaaagctcgtgaacagtcccacaaatctttcatcagagatgagcttcag
gttatggttgccactattgcttttggtatgggtattgacaagccaaatatcaggtgtgtg
atacactatggttgccccaaaagtctagaatcatattatcaggaaagtggacgttgcggt
agggatggtttagcttcaatctgctggttgtattactcaagaagcgattttggcaaagct
gacttttactgttcagaagcacaatcggaaagtcagaagaaagctattattgattccttc
agggctgcagaaaagtattgcttgctggctacttgtcgcagaaagttcttgttacagtat
tttggagaagaaaccaccaatgcctgtggtaagtgtgataactgcacaaggtctaaaagt
gagagggacttgtcaagagaagccttgctgttattgtcttgcatacaatcctgtggagat
cgctggggtctcaatatgcctgtggacgttcttcgaggatctcgttcaaaaaagatactg
gataatgatttcgataagctctcgttacatggtcttggtaaaggctattcatccaactgg
tggaaagcccttgctggattattaattgctcatgattatctgaaggagaatacccaggat
atttatagaactgtaagtgttagcccaaatgggaagaaatttctctcttgtgcaaattct
gtgcaccaatctccattggttttagctataacaagtgagatgattgatgaggaagagcat
ggtggtcaacagaagaaagttggagacctgaataactcaactactctagaatatgaagat
ttctctgaggctgagacaaagctttatcgcatgcttttagatttcagaatgaaacttgca
caagataatggaactgctccatatgctatatgtggtgatgaaactattgtaaagatagca
aagattagaccatctaccagagccaggctggcgaacattgatggtgtcaaccagcacttt
gtgtctaagtacggtggtagtcttcttgaaagtatttgtcaagcatcagaagaactaaag
cttcccctggatggagaggcaccagtactacaagctgctagtacaagaaaagtccttgca
acctctgagcgaaaattagttactccagcgaagttaaatgcgtggaaattatggcagaat
gaagaagttttaatcccacaaattgcaagtacatatggtataaaggagcaaacagtcacc
acatacatccttgaagttgctcgggatggacatgaggtgaactgggctagattctgcaac
gagatagggctaacaagtgaagtagcctcacaaattcgttttgcggttacaaaagttgga
agggaccgtttaaaaccaattaaagaagaattgccagaagctgttagctatgaacaaatc
aagactttattggcaatggaagacctcaatgtatcaacagaaggcttgggttggaaaagt
aactcatcagacagtgctcctgttgagatagactcatcggcatgcaccagaggagacaga
acacatgaaccaggaagttggagatccttcaccgaaaaaagagcagggtctcactctgaa
actaatggcagccagacactaacaccgccaagttgtgaaactattgcaggaacaaagcaa
ccacgtaatgacgagtctttacttgatgagtgtccttcagtgaaacatcacaaagccaat
gaaggagagaactgtcttgatggattagaggcaacagaaagcactatactagagtggatt
gcagaacacgatggggttttattgtctgaaatcactgaccattttggaggatcagagaga
gagtttattgtcaacctcgtgggatgtcttgaagggaaatatgttatatttaagaagaac
gatatgtacagagctttataa
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