Asparagus officinalis (garden asparagus): 109848177
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Entry
109848177 CDS
T05243
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 8-like
KO
K12614
ATP-dependent RNA helicase DDX6/DHH1 [EC:
5.6.2.7
]
Organism
aof
Asparagus officinalis (garden asparagus)
Pathway
aof03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
aof00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
109848177
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aof03019
]
109848177
03036 Chromosome and associated proteins [BR:
aof03036
]
109848177
Enzymes [BR:
aof01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
109848177
Messenger RNA biogenesis [BR:
aof03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
109848177
mRNA degradation factors
5'-3' decay
Decapping complex
109848177
Chromosome and associated proteins [BR:
aof03036
]
Eukaryotic type
Gene silencing
piRNA pathway
109848177
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Sema4F_C
CMS1
Aldedh
NA-iREase2
TFIIA
Motif
Other DBs
NCBI-GeneID:
109848177
NCBI-ProteinID:
XP_020273140
LinkDB
All DBs
Position
7:76794531..76805239
Genome browser
AA seq
494 aa
AA seq
DB search
MNNRGRYPPGIGDGGGRGAGVGNPNPSYYGRIPPQQQQQQQQQQYVQRNLMQYQQQQNQQ
QQQQWLRRNQIGSDSGGSESNRAVQSASIDTSSPDWKSQLKIPPPDTRYRTEDVTATKGN
EFEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALE
KIDQDKNVIQVVILVPTRELALQTSQVCKELGKHLKIQVMATTGGTSLKDDIMRLYQPVH
LLVGTPGRILDLTKKGVCVLKDCSMLIMDEADKLLSHEFQPSIEQLIHFLPSNRQILLFS
ATFPVTVKDFKDRYLPKPYIINLMDELTLKGITQYYAFVEERQKVHCLNTLFSKLQINQS
IIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRG
IDIQAVNVVINFDFPKNSETYLHRVGRSGRYGHLGLAVNLITYEDRFNLYRIEQELGTEI
KQIPPQIDQAIYCR
NT seq
1485 nt
NT seq
+upstream
nt +downstream
nt
atgaacaatcgaggaaggtatccgcctgggatcggcgacggcggaggccgaggggcgggc
gttggaaaccctaaccctagttattatggtaggattcctcctcagcagcagcagcagcag
cagcagcagcagtatgtacagaggaatttgatgcagtatcagcagcagcagaatcagcaa
cagcagcagcaatggctgaggaggaatcagattgggagtgattctggtggcagtgaatcg
aatcgagcagttcagtctgctagtattgatactagctctcctgattggaaatcacaattg
aagataccaccacctgatacacgttacaggactgaggatgttactgcaactaaaggaaat
gaatttgaagattactttcttaagagggaattacttatgggaatatatgagaagggattt
gaaagaccttcaccaattcaggaggaaagcattccaattgcactaactggcagtgatatt
ctagctagagctaaaaatgggactgggaaaacagctgcattttgtatccctgcactggaa
aagattgatcaagacaaaaatgttattcaagttgttatattggttcctacacgagaatta
gctctccaaacatcacaagtttgtaaggagcttgggaaacatttgaagattcaggttatg
gccactacgggtggaaccagcttgaaagacgacatcatgcgtctgtaccaaccagtccat
ttacttgtaggaacaccaggtcgcatacttgatcttactaaaaaaggtgtttgtgtcctg
aaggattgctcaatgctcataatggatgaggctgacaaacttctctctcatgagtttcaa
ccttcaatagagcagttgatacattttctcccctcaaatcggcagatattgttgttttca
gccacgtttccagtcactgttaaggatttcaaggacagatacctgcctaaaccctacata
attaatcttatggatgaacttacactaaagggaattacacagtattatgcctttgtggaa
gaaagacagaaagttcattgtttgaatacccttttctcaaagcttcaaataaaccagtct
atcatattttgcaactccgttaaccgagtagagctattggcgaagaaaatcacagagctt
ggatattcctgcttttacattcatgcaaagatgttgcaggatcatcgcaatagagttttc
catgattttaggaatggtgcatgtaggaatcttgtttgcacagatttgtttactaggggt
attgatatccaggctgtaaatgtcgtgatcaactttgatttccctaagaattcggaaaca
tatctacacagggttggtcgttctggaaggtatggtcacctaggtttggcagtgaatttg
ataacctacgaggatcgattcaacctgtataggatcgagcaagaattgggaaccgagata
aagcagattcctccacagattgaccaggctatttattgcagataa
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