Asparagus officinalis (garden asparagus): 109848192
Help
Entry
109848192 CDS
T05243
Name
(RefSeq) putative tRNA pseudouridine synthase
KO
K06173
tRNA pseudouridine38-40 synthase [EC:
5.4.99.12
]
Organism
aof
Asparagus officinalis (garden asparagus)
Brite
KEGG Orthology (KO) [BR:
aof00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
aof03016
]
109848192
Enzymes [BR:
aof01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.12 tRNA pseudouridine38-40 synthase
109848192
Transfer RNA biogenesis [BR:
aof03016
]
Eukaryotic type
tRNA modification factors
Psudouridine synthases
109848192
Prokaryotic type
109848192
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PseudoU_synth_1
Ribos_L4_asso_C
Motif
Other DBs
NCBI-GeneID:
109848192
NCBI-ProteinID:
XP_020273165
LinkDB
All DBs
Position
7:complement(10657681..10677334)
Genome browser
AA seq
512 aa
AA seq
DB search
MAASSSLRLPFSSLTLRNPSSLFVSPLPKSRSLLQNPINIRVFCSSLSPNDREEGSQTRW
ESFRKKKVVMRVGYVGTDYKGLQKQPHEDPLSTIEGELEHAIYKAGGIHDSNYGNLHKIG
WARSSRTDKGVHSLATMISLKMEIPEHAWQEDPNGIALASYVNMNLPKNVKVFSILPSQG
SFDARRECTIRMYSYLLPAEVIGITRDCGSLEIDNHLTEFSSILNCFEGEHAFHNYTVRS
KYRQQTPGKSHNMRRSRLYQDKMASEVIGSDEEDTTDQCEEHLNSMCNGESGFHEYASLG
KQKDILRSSDSLVVKARWLHEPDEMDRISGSHFRKIFECSCGKFEKSSGFNYIEVSICGE
SFMLHQIRKMVGTAVAVKRGLLPRDILELSVAKFSRIVLPLAPSEVLLLKGNSFAIRTRP
GNMTRPEMRRIVESEEIQKEVDEFYSSVILPQLSKFLDPSKSPWKEWVDNLDKHTSIPEE
ELNEVRIAWKGWKENFEKTKSEKAKNFCTVGK
NT seq
1539 nt
NT seq
+upstream
nt +downstream
nt
atggcggcctcctcttcacttcgcctcccgttctcttcactcacactcagaaaccctagc
tctctcttcgtctcccctctccccaaatctcgctcactccttcaaaaccctataaatatt
agggttttctgctcgtcgctgagccccaacgatcgtgaagagggctcgcagacgagatgg
gaatccttccgcaagaaaaaggtcgtgatgcgtgttggatacgtcggtactgattacaaa
gggcttcagaagcagccgcacgaggatcctttatcgactattgaaggagaactggaacac
gccatctacaaagctggagggattcatgatagtaattatggaaacttgcataaaattgga
tgggccagaagtagccgaactgacaaaggagtccattccttggcaactatgatttcatta
aagatggagatacctgaacatgcatggcaggaagatcctaacggtattgcactggcaagt
tatgttaacatgaatttgcctaagaatgtcaaagtcttcagcattttaccttcccaaggg
agttttgatgcaagaagggaatgcacaatccgtatgtactcatatctccttcctgcagag
gttattgggatcacaagggactgtggttctctggaaattgataaccatctaacagaattc
agtagcatattgaattgtttcgagggagagcatgctttccataactacactgttcgttcc
aaatataggcagcagactcctggaaagagtcacaatatgagaagatctagactgtatcag
gataaaatggcatctgaggtcatagggagcgatgaggaggatacaacagatcagtgtgaa
gaacatttgaattccatgtgtaatggtgaatctggttttcatgaatatgcctctcttgga
aaacaaaaggatattttgagaagttcagattctttagttgttaaagcgagatggcttcat
gaacctgacgaaatggatagaattagtggatcccacttcagaaaaatctttgaatgttct
tgtgggaagtttgagaagtcatcaggattcaattatattgaagtctcgatttgtggggaa
tccttcatgcttcaccaaattcggaaaatggtcggaactgcagttgcagtgaaacgagga
ttgctaccacgggatatactagagttgtccgttgccaagttttctcgcattgttctacct
cttgctccatctgaagttctacttctcaagggcaacagctttgcgatcagaactcgtcct
ggaaatatgactcgccccgaaatgagaagaattgtagaatctgaagaaatccagaaggaa
gttgatgagttctactcttctgtgattttgcctcagctctcaaagttcttagatccatcc
aaatccccatggaaagaatgggtagacaacttggataagcacacaagcatcccagaggag
gagttgaatgaagtaagaatagcatggaaaggttggaaagaaaattttgaaaagacgaag
agtgaaaaggcaaaaaacttctgtacggttggaaaatag
DBGET
integrated database retrieval system
