Asparagus officinalis (garden asparagus): 109848274
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Entry
109848274 CDS
T05243
Name
(RefSeq) probable RNA polymerase II transcription factor B subunit 1-1
KO
K03141
transcription initiation factor TFIIH subunit 1
Organism
aof
Asparagus officinalis (garden asparagus)
Pathway
aof03022
Basal transcription factors
aof03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
aof00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
109848274
09124 Replication and repair
03420 Nucleotide excision repair
109848274
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
aof03021
]
109848274
03400 DNA repair and recombination proteins [BR:
aof03400
]
109848274
Transcription machinery [BR:
aof03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
109848274
DNA repair and recombination proteins [BR:
aof03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
109848274
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BSD
PH_TFIIH
Motif
Other DBs
NCBI-GeneID:
109848274
NCBI-ProteinID:
XP_020273292
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Position
1:8260593..8280147
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AA seq
605 aa
AA seq
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MAAITMKVKYKTSVKDPGVPGVLKMNEEKFVFVPNDPRSSASKLNVGFKNIKGHKFSKDG
SKQALLNLTLDSEKGGGYIFEFDNFPDRNACRDFVGKVLGKFQSVASSTKDQAVPEKSNA
TVHAEQLSASEMERRMKLLRDDSELQKLHKEFVIGGVLTESEFWRQDKNLLGNDGRRTLK
QRTGLKSAMLADVRPSADGRANKVMFSLTPEIIHQIFVEKPAVLRAFLNYVPRKMSEKDF
WTKYCRAEYLQWSKNSATVAAEAAEDEDLAIFLKQDDILANEARRKMRRVDPTLDMEADL
GDDYLHLPDHGILRDGTKEVVDTDNELSKRSISQDLNRHAAVVLEGRPLDMELGDTRTVA
EALARSRQAESNETSDENEDLERLERVSRMTEIEDLQGPQNLPYAPLCIKDPHEYFDCQL
ANALKALGDSGAGIKPDCSLNAEEAYVYLAEQISEVKFRGLNDPVVQPEIALKVLNGLNQ
HISSTKFHFGKSPQESVLDTLPNRTKEELLHNWTSIQELLRHFWSSYPMTTTYLYHKVLK
LKDAMTQIYLKLQKIKESVQSDYRHQVSLLVQPMLQALDAAFAHYDTEQQKQSTKSGAKP
NGFVQ
NT seq
1818 nt
NT seq
+upstream
nt +downstream
nt
atggcggcgatcaccatgaaggttaagtacaagaccagcgtcaaagaccctggggtccct
ggagttctcaaaatgaacgaggagaaatttgtttttgttcctaatgatcctaggtcttca
gcgtcaaagcttaatgtggggtttaagaacattaaaggtcacaagtttagtaaagatggg
tctaaacaagcattgttgaatcttacactggattctgagaagggtggaggttacattttt
gagtttgataattttccggaccgcaatgcttgccgagattttgttggaaaagtacttgga
aagtttcagtctgttgcatcctctacaaaagaccaagcagtacccgaaaagtccaatgct
acagttcatgcagaacagcttagtgcctcggagatggagcgtcggatgaaactgttgcga
gatgatagtgaattgcagaaactgcataaggaatttgtcattggcggtgttttgactgaa
tcagagttctggcgccaggacaagaatttacttggtaatgacggtcgtagaacattaaag
caacggacggggctcaaaagtgccatgcttgcagatgtcaggccatcagctgatggtcgg
gcgaataaagttatgtttagcttgaccccagagattatccatcagatttttgttgaaaaa
ccggctgttcttcgtgcatttttgaattatgtgccaagaaagatgtcggaaaaagatttt
tggacaaaatactgtcgagcagaatatttgcaatggtccaagaattctgcaacagttgct
gcagaggcagctgaagatgaggatcttgcaatatttttgaagcaggatgatatattggcc
aatgaagctcgccgaaagatgagacgtgtggatccgacattagacatggaagctgatctt
ggggatgactacctgcatcttccagatcatggtattttgcgtgatggaaccaaggaagtt
gtcgatactgacaatgagctatcaaagaggtcgatctcgcaggatcttaatcggcatgca
gctgttgtccttgaaggcaggccattagacatggagttgggagacacacggactgttgct
gaagctcttgcaaggtccagacaagccgagtccaatgaaacatcagatgagaatgaagac
ttggaacgcctagaaagggtttctcgcatgactgaaattgaggaccttcaaggccctcaa
aaccttccatatgcaccactatgcatcaaggatccacatgagtactttgattgtcaacta
gcaaatgccctaaaggctttaggtgacagtggcgctggaataaaacctgattgcagtctt
aacgctgaggaagcctatgtttatttagcagagcaaatctctgaggtgaaattccgtggg
ttgaatgatccagttgttcaacctgaaatagcactgaaggttcttaatggattgaatcaa
catatttcaagtaccaaatttcattttgggaagagtccacaagagagcgtccttgatacg
ctgcccaacaggacaaaagaggagctcttgcacaactggacatctatccaggagttgctt
cgccatttctggtcgtcatatccaatgacaacaacatatctgtatcataaggttttaaag
ctgaaagatgccatgacgcagatctatctgaagcttcagaaaataaaggaatcagtgcag
tcagattacaggcatcaggtctctctccttgtgcagccaatgctccaggctttggatgcg
gcttttgctcactacgatactgagcaacaaaagcagtccacaaaatctggtgctaagcct
aatggatttgttcagtaa
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