Asparagus officinalis (garden asparagus): 109848350
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Entry
109848350 CDS
T05243
Name
(RefSeq) LOW QUALITY PROTEIN: replication protein A 70 kDa DNA-binding subunit A-like
KO
K07466
replication factor A1
Organism
aof
Asparagus officinalis (garden asparagus)
Pathway
aof03030
DNA replication
aof03420
Nucleotide excision repair
aof03430
Mismatch repair
aof03440
Homologous recombination
aof03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
aof00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
109848350
03420 Nucleotide excision repair
109848350
03430 Mismatch repair
109848350
03440 Homologous recombination
109848350
03460 Fanconi anemia pathway
109848350
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
aof03000
]
109848350
03032 DNA replication proteins [BR:
aof03032
]
109848350
03400 DNA repair and recombination proteins [BR:
aof03400
]
109848350
Transcription factors [BR:
aof03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
109848350
DNA replication proteins [BR:
aof03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
109848350
DNA repair and recombination proteins [BR:
aof03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
109848350
MMR (mismatch excision repair)
109848350
DSBR (double strand breaks repair)
HR (homologous recombination)
109848350
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac-A_C
REPA_OB_2
Rep-A_N
zf-CCHC
tRNA_anti-codon
zf-CCHC_2
zf-CCHC_3
zf-CCHC_5
DUF223
zf-CCHC_4
zf-like
Motif
Other DBs
NCBI-GeneID:
109848350
NCBI-ProteinID:
XP_020273389
LinkDB
All DBs
Position
7:4620635..4624364
Genome browser
AA seq
855 aa
AA seq
DB search
MASASLTRGAISAISLGVEIVKPVLQATDIRLVHTAQSTTERYRMMLSDGDHMQQAMLAT
QMNSIVKEGRLQKGSIVQLNEFICNVIQGRRIIIVINLEVVVEKCEPIGEPKTYDASAAP
QNRTIPAPSSVVNQPGVASGVPQMYGGSHSASPVAGQNMMSGASVSPKQDPLTNPASYGG
AMPGRNMGGSNSLHSKPDLGAGNPVGSYVNGGIQNQRFSNTSVGGFRPPGNTYGRPGQQA
YQQPPSMYINRGPIARNEAPARIVPIAALNPYQGRWTIKARVTSKGELRRYNNPRGEGKV
FSFDLLDSEGGEIRVTCFNLVADQFYDQLEAGKVYLISKGTLKPAQKNFNHLNNDYEIFL
EATSTIQPCPEEDNSIPKQQFSFRPVSEIESMENNTMVDLIGVVSSINPPGTIMRKNGTE
THKRTLQLKDMSGRSVEITLWGNFCSAEGQQMQELCDSGVCPILAIKAGRVSDFSGKSVG
TITTSQLFINPDFPEATKLKEWXDSQMGTPDSRKTVTQIKDEGLGRSEKPDWITVKATIS
FVKSDNFCYTACPLMVGDRQCNKKVINNGDGTWQCERCDRSFPECDYRYLLQFQIQDHTG
MTWVTAFQEAGEEIMGVPAKKLYYLKFEEQDEVKFSEFIRNILFNQYLFKLKVKEETFSD
EQRVKSTVVKAEKVNPASESRYLLGLIGKLSVESSNGLPRLSVPNAGYMRSTSSNFSTSG
VADRYRVEPANQAGLKANIGYGGVMNHNVGSQAFCNSCGSAGHTLQNCPRSLNRQGQSFG
GDFGNRVSNVANDTGNVCFKCNQTGHWARDCPASGDIANRASNVSNDSGNVCFKCNQSGH
WARDCPASSGIRAYR
NT seq
2568 nt
NT seq
+upstream
nt +downstream
nt
atggcctctgcgagtctcacgaggggagcgatctcggcgatctcactcggggtcgagatc
gtgaagccagttctccaggcgacggacataaggctggtccacacggcgcagagcacgacg
gagaggtaccggatgatgctctccgacggcgaccacatgcagcaggcgatgctcgccacg
cagatgaacagcatcgtgaaggaggggcgactgcagaagggatccatcgtccagttgaat
gagttcatctgtaatgttattcaaggccgcaggattataattgtcatcaacctggaagtt
gtagttgaaaagtgtgagccgattggggaaccgaaaacctatgacgcttctgctgctcca
cagaaccgaactataccagcaccttcatccgtagtaaaccagccgggtgtggcctctgga
gtgcctcaaatgtatggtggttcacactctgctagtcctgttgctggtcaaaacatgatg
agtggagcttctgttagtcctaagcaggatccactcacaaatcctgcatcctatggtggt
gccatgccagggaggaatatgggcggctcaaattccttgcactcaaaaccggatcttggt
gctggcaatccggttggttcatatgtaaatggtggtattcagaaccaacggttctctaac
acatcagttggaggatttcgtcctccgggaaatacttatggtcgcccaggtcagcaagcc
taccagcagccaccttccatgtacataaatcgggggccgatagctaggaatgaagctcct
gctcgtatagttccaattgctgctctgaatccttaccaaggcaggtggacaatcaaagct
agggtgacttctaagggggagctaaggcgctacaacaatcctagaggagagggcaaagtg
ttctcttttgaccttcttgattctgagggtggagaaattagagtgacttgtttcaacctt
gtagctgaccagttttatgaccagctcgaggctggaaaagtgtacttaatatccaaggga
accttgaagcctgcgcagaagaattttaatcatctcaataatgattatgaaatatttctg
gaggctacttcaacaatccagccttgtccagaggaggacaactcgatcccgaagcagcaa
ttcagttttcgaccggtaagtgagattgagtccatggagaacaacaccatggttgatttg
atcggtgtagtgtcttcaataaatcctccaggtacaataatgagaaagaatggcacagaa
acacacaaaagaacccttcagttgaaggatatgtcaggtcgaagcgttgaaattacttta
tgggggaacttctgcagtgctgaaggccagcagatgcaagagttatgtgactctggtgtc
tgtcctattttggctatcaaagctggcagagtgagtgattttagtggtaaatctgtgggg
acaatcaccactagccagctattcataaatcctgattttcctgaggcgaccaagttaaag
gagtggngggattcacaaatgggaacgcctgattcccgaaagaccgttacacaaataaag
gacgagggtcttgggagatctgagaagcctgattggatcacagtaaaggctacaatttct
ttcgttaaatctgataatttttgttatacagcctgtccattgatggtgggtgatcgtcaa
tgcaataagaaagttataaataatggtgatggaacatggcaatgtgagaggtgtgaccga
agttttcccgagtgtgattataggtacttacttcagtttcagatccaagatcatacgggt
atgacttgggtgacagcattccaagaagccggtgaggaaattatgggtgttcctgcaaaa
aagctgtactacttgaaattcgaggagcaagatgaagtaaaattttctgagttcataaga
aacatattattcaatcagtatttgttcaagttgaaagtaaaagaggaaacattcagtgat
gagcagcgtgtgaaatcaaccgttgttaaagctgaaaaagtgaacccagcatcagagagc
aggtatcttttgggtctcattggtaagctttcagttgaatcttccaatggacttccacgt
ctttccgtgcctaacgctggatacatgcggtcaacatctagtaacttttcgaccagtggt
gttgctgatcgatatagagttgaaccagcaaaccaagcaggacttaaagctaatattgga
tatggtggagttatgaatcataatgttggatctcaagcattctgtaatagttgtgggtct
gctggtcacactctccagaattgccctaggagcttgaacaggcaaggacagtcttttggt
ggggattttggcaatagggtttcaaatgtcgcgaatgatactggtaatgtgtgcttcaaa
tgcaaccaaactggacactgggctagagattgtcctgcatcaggtgatatagcgaataga
gcttcaaatgtctcgaatgattctggtaatgtttgcttcaaatgcaaccagtccggacac
tgggctcgagattgtcctgcttctagtggtatccgcgcgtacaggtag
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