Asparagus officinalis (garden asparagus): 109848472
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Entry
109848472 CDS
T05243
Name
(RefSeq) nuclear cap-binding protein subunit 1-like
KO
K12882
nuclear cap-binding protein subunit 1
Organism
aof
Asparagus officinalis (garden asparagus)
Pathway
aof03013
Nucleocytoplasmic transport
aof03015
mRNA surveillance pathway
aof03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
aof00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
109848472
09122 Translation
03013 Nucleocytoplasmic transport
109848472
03015 mRNA surveillance pathway
109848472
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aof03019
]
109848472
03041 Spliceosome [BR:
aof03041
]
109848472
Messenger RNA biogenesis [BR:
aof03019
]
Eukaryotic type
mRNA processing factors
5' end processing
Cap binding complex
109848472
Spliceosome [BR:
aof03041
]
Common components
Common spliceosomal components
Cap binding complex
109848472
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MIF4G_like
MIF4G_like_2
MIF4G
Myosin_tail_1
PV-1
DUF5798
Motif
Other DBs
NCBI-GeneID:
109848472
NCBI-ProteinID:
XP_020273572
LinkDB
All DBs
Position
7:complement(25890463..25939461)
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AA seq
861 aa
AA seq
DB search
MSSSSSWRSLLLRIGDKCPEYGGSVDFKEHIDTCYNVLLREWENSKDDIFELLLQCAEQL
PHKAPFYGVLVGLINLENENFAKQVVDITHSRFQDALYSGNCNRIRILLRFLTVLMCSNV
VQPDSLVGIFEILLSSAATTIDDDNGNPSWQSRADFYVTCILSSLPWGVAELIEQVPEEF
ERVMVGVQSYLSIRSHSPEMGSKVFELEEDEALERKDFLEDLWDRIQVLSSNGWKAESVP
RPHLSFESQLVAGSSHGLSPISCPELPAISSSRSAIAFEKEKYEAMLKYPQRLHRLNIFP
SSKAEIMQPIDRFVVEEYLLDVLLFFNGSRKECASFMVSLPVPFRYEYLMAETIFSQLLL
LPRAPFKPLYYTLVIIDLCKALPGAFPSVVIGAVHALFDRIADMDMECRTRLILWFSHHL
SNFQHVWPWGEWAYVKDLPIWAPQRVFVQEVLEREIRLSYWDKIKQSVENAPELEELLPP
KDGPNFKYSSNDGGENTGHALSSEFSSMVRARKSVQQLISWLEESIIPPHGHRFAIEVVI
QTLLDIGSKSFTHLITVLERYGQIIAKLCPDHDSQVLLIEEVSSYWKSSSQMIATTIDRM
MGYRLISNLAIVTWVFSPSNVNYFHLSDRPWEILRNTINKTYNRITDLRSEILSLEKSVS
SAEEATIKAQKELEAAEAKLELVDGQPVPAENLGRLKRLRGYASKAKDEETSLRESLEAK
EALFARALEENKALFLSLYKNLGDVLKERLPPVSAEGKLPNLKAAHVESVAMDTEEPPAM
DVDQDNGKTSSQKNGERITNGYNIGEREQWCLTTLGYVKTFSRQYATEIWPHIEMLEAEV
FVEDAHPLFKKAAYVGLCRRS
NT seq
2586 nt
NT seq
+upstream
nt +downstream
nt
atgagtagcagcagcagctggcgatcgctcctgttgcggatcggcgacaagtgtcccgag
tacggcggatccgtcgacttcaaagaacacatcgatacgtgctataatgtgctgttgcgc
gagtgggagaattctaaagatgacatctttgagcttcttcttcaatgtgcagagcagctg
ccccacaaggctcctttctacggcgtattggttggcttaattaatttggaaaatgagaac
tttgctaaacaagttgtagatattacccactcaaggttccaggatgcattatattctgga
aattgtaataggattcgcatactgttgcggtttctaacagtgctgatgtgcagcaatgtt
gtccaaccagattctttagttgggatcttcgaaattctgttatcttctgctgccactaca
atagatgatgataacgggaatccttcttggcagtcacgtgctgacttctatgtcacttgt
atcctatcctctcttccatggggagttgcagagctgattgagcaagttcctgaagagttt
gagagagtcatggtcggagtgcaatcttatttaagtatccgaagccattctccggagatg
ggctccaaagtctttgagttagaggaagatgaggctcttgaaagaaaggattttctagaa
gatctatgggaccgcatacaggtcctttctagtaatggctggaaagctgaaagtgttcca
agaccacacttgtcatttgagtcgcagttggtggctggatcatctcatggtctttctcct
attagctgtccggagttacctgctatctcgtcatcacgttctgcaattgcttttgaaaaa
gaaaagtatgaagctatgttgaagtacccacaaaggcttcataggctcaacatatttcct
tccagtaaagctgagatcatgcagcctattgatcgctttgttgtagaggaatatttactg
gacgtgttacttttttttaatgggagccgcaaggaatgtgcttccttcatggtgagcctc
cctgtaccctttcgctatgaatacctgatggcagagaccattttttcccagctattgtta
ctacctcgagcaccatttaagccattatactacacattggtcattattgatctttgcaag
gctcttcctggggcatttccttctgtggtaataggagcagtccatgctttgtttgacaga
attgctgatatggatatggagtgtcgcacaaggcttatattatggttttctcatcactta
tcaaattttcaacacgtttggccttggggagaatgggcttatgttaaagacctccccata
tgggcccctcaacgagtttttgttcaagaggtattggaaagagaaatccggttatcgtat
tgggataaaattaagcagagtgtagaaaatgccccagaactagaagagttgcttcctcca
aaagatggaccaaacttcaagtacagtagcaatgatggtggagaaaacacagggcatgca
ctttcttcagaatttagcagtatggtaagggcaagaaaaagtgtacaacaacttatttca
tggttagaagaaagtatcattccaccacatggccacagatttgcaattgaagttgtaatc
cagactcttttggacattggttcgaagagtttcactcatttaattaccgttcttgagaga
tatggtcaaattattgccaaactttgtcctgatcatgatagtcaagttcttctgatagag
gaagttagctcctactggaagagtagttctcaaatgatcgctactacgattgaccgaatg
atgggttaccgcctcatatcaaatctggcaattgtcacttgggttttctctccatccaat
gttaactacttccatctttcagatagaccatgggagatccttagaaacacaatcaacaag
acatacaatcgaatcactgatctcagaagtgagattctgtcacttgagaagagtgtgtca
tcagcagaggaagctacaatcaaagctcagaaagagcttgaggctgctgaggcgaaactt
gaactggttgatggccagcctgtacctgctgagaatttggggaggttaaaacggcttaga
gggtatgcttcaaaagcaaaagatgaagaaacatctttacgggaatccttagaagctaag
gaggctctctttgctcgggctcttgaagaaaacaaggcactttttttgtcactatacaag
aaccttggagatgtgctgaaggaaagattgcctcctgtatctgccgaaggaaaattgcct
aatttaaaggctgctcatgtggaaagcgtggctatggacactgaagagccaccagcaatg
gatgttgaccaggataatggcaaaacctccagtcagaaaaatggcgaaaggattactaat
ggctacaacattggggagcgagagcagtggtgtctaacgacattgggctatgtcaagacc
ttttcaaggcagtatgcaactgagatttggcctcatattgaaatgctggaggcggaggtg
tttgttgaagatgcccatccgctgttcaagaaagctgcttatgttgggctttgcaggcga
agctga
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