Asparagus officinalis (garden asparagus): 109848722
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Entry
109848722 CDS
T05243
Name
(RefSeq) small RNA degrading nuclease 5 isoform X1
KO
K14570
RNA exonuclease [EC:3.1.-.-]
Organism
aof
Asparagus officinalis (garden asparagus)
Pathway
aof03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
aof00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
109848722
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
aof03009
]
109848722
Ribosome biogenesis [BR:
aof03009
]
Eukaryotic type
Pre-60S particles
RNases
109848722
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Gene cluster
GFIT
Motif
Pfam:
RNase_T
Phosphodiest
Motif
Other DBs
NCBI-GeneID:
109848722
NCBI-ProteinID:
XP_020273959
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Position
7:complement(3774174..3784307)
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AA seq
622 aa
AA seq
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MSSLPKPRSSLNQSLPLLNPRPLLNPPPSTVAVTVSDQPQRPLNAAVQTNGTLGRRIVAE
EMGSSSLKKPENPNGDGEGGGADTSYFDIYGPDAKADIIFKTPTANSTLNLQDIQGLITW
VIGEGMMPSWVFVKNKPLIQKVILLHVPGLDAALYMSNSSILSSLRKRCGNPMPVLALSC
VSDEMQTIDALLTCKMKRKREEVDLNSQVPSQTSKQEKQFSFGNQKDLPFPVIYYTLSRK
ELEDNGYCFSQAGFLSTVSAPAGSSPYEMLALDCEMCVTANGFELTRVTLVDVAGEVVLD
KLVKPSNPIIDYNTRYSGITCEMLSDVTTSLQDIQEEFLKIVYKETILVGHSLENDLLAL
KISHGLVIDTAILYQHPRGLNYKSALRVLSRRFLSRLIQVSGSGHDSVEDARAAMELALL
KIKNGPDFGSPSFTRSKLVSILREKGKTCSLVDDIHIVKRYSDGSCNSVPVFSDEEALSR
TIKEAKNENTNFIWTRFSALSAYYNTQAQDEEKLRCHLSQIISLLTCNGRSTNQDEKLGV
TSPELKDILKCIDGRIKKLCKALPVNALLIVSTGHGDTAIVQRVRKMLNENKTTISRENT
VKALEELQAKAEVGLCFAGVKH
NT seq
1869 nt
NT seq
+upstream
nt +downstream
nt
atgtccagtcttccaaaaccccgatcttctctaaaccaatccctccctctcttaaacccc
cggcctctcctcaatcctcccccgtcaactgtcgccgtcaccgtctccgaccaacctcag
cggccgttaaacgccgccgtccaaactaacggcacgctcggacggcgaatcgtcgctgaa
gaaatgggctcgtcgtccctaaagaagcccgaaaaccctaacggcgatggagaaggcggc
ggcgccgacacgtcatactttgatatctacggtcctgatgctaaggcagatattatcttc
aaaacgccaacagcgaattcaacgctaaacctgcaggacattcaaggacttatcacctgg
gtaattggtgagggtatgatgccatcgtgggtttttgtcaaaaacaaaccgcttatacag
aaagtcattcttctccatgttcctggcctggatgctgcactttacatgtcaaattccagc
atactatcaagtttgagaaaacgttgtggtaatccaatgccagttttagctcttagctgc
gtgtcagatgaaatgcaaacaatcgatgcgcttctaacgtgcaaaatgaagagaaagcgt
gaggaagttgatttgaattctcaggttcccagtcaaacttctaaacaagaaaagcaattc
tcctttggtaatcagaaggatttaccttttcctgttatatactatacgctttcaaggaag
gaactagaagataatggctattgctttagccaagcaggttttctttccaccgtttctgca
cctgcagggtcttcaccctatgaaatgcttgcacttgattgtgagatgtgcgtgacagca
aatggatttgaactgacaagggtgactttggtggatgttgcaggtgaggtggtgttagac
aagctggttaaaccttccaaccctataattgactacaacacaaggtatagtggtataaca
tgtgagatgcttagtgacgtgacaacctcactccaggatattcaggaagagtttcttaaa
attgtctataaagagactattcttgtgggacactctctagagaatgaccttttagcgttg
aagatatctcatggcttggtgattgatactgctatcttgtaccaacatccccgtggtttg
aactacaaatcggctttgcgagttctatcacggagatttctttcccgactaatccaggtc
tctggaagtggacatgacagcgttgaagatgctagagctgcgatggaactagcacttttg
aaaattaagaatgggccggattttggttccccttcattcacacgaagcaaattagtttca
atcttgcgtgaaaaagggaaaacatgctctcttgtggatgatatacacatagtgaagaga
tattctgatggatcatgcaattctgttccagtgttttcggatgaagaggctctttcaaga
accataaaagaggcaaaaaatgaaaatacaaatttcatttggaccagattttcagcattg
agtgcatactacaatacccaagcccaagatgaggagaagctgagatgccatctctcacag
atcatctcgctgctgacatgtaacggtcgatccacaaaccaagatgaaaaactgggcgtc
acaagccctgaattgaaggacattctaaaatgcattgatggcagaattaaaaagctttgc
aaagcgttaccggtgaatgctttactcatagtttcaactggtcacggtgatacggctatt
gttcaaagagtaaggaagatgctgaatgagaataagacaacaatcagtcgtgaaaacact
gtaaaagctctggaagagctccaggccaaagctgaagtcggtctttgttttgctggcgtc
aaacattga
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