Asparagus officinalis (garden asparagus): 109848972
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Entry
109848972 CDS
T05243
Name
(RefSeq) protein BREAST CANCER SUSCEPTIBILITY 1 homolog
KO
K10683
BRCA1-associated RING domain protein 1
Organism
aof
Asparagus officinalis (garden asparagus)
Pathway
aof03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
aof00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
109848972
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aof03019
]
109848972
04121 Ubiquitin system [BR:
aof04121
]
109848972
03036 Chromosome and associated proteins [BR:
aof03036
]
109848972
03400 DNA repair and recombination proteins [BR:
aof03400
]
109848972
Messenger RNA biogenesis [BR:
aof03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Negative regulators of mRNA 3' end processing
109848972
Ubiquitin system [BR:
aof04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
BRCC complex
109848972
Chromosome and associated proteins [BR:
aof03036
]
Eukaryotic type
Centrosome formation proteins
Centrosome duplication proteins
Regulators of centriole replication
109848972
DNA repair and recombination proteins [BR:
aof03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-core complex
109848972
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BRCT
zf-C3HC4_2
BRCT_2
zf-HC5HC2H
zf-C3HC4
zf-RING_2
zf-RING_6
zf-C3HC4_3
zf-C3HC4_4
zf-RING_UBOX
zf-RING_5
RTT107_BRCT_5
zf-HC5HC2H_2
zf-Nse
zf-rbx1
zf-RING_10
PTCB-BRCT
RING_XB3-XBAT31
Motif
Other DBs
NCBI-GeneID:
109848972
NCBI-ProteinID:
XP_020274313
LinkDB
All DBs
Position
7:141379776..141385437
Genome browser
AA seq
1015 aa
AA seq
DB search
MMADLSHLEKMGRELKCPICLSLLKSAVSLGCNHVFCNACITELMKSASDCPVCKTQFRR
REVRAAPHMDNLVTVFKSMEAAVGVNILTTQIGPSTKNPGDIEKNSDAEEATLEHKGRSR
KKRPSGKKSQKSEKADAMSADSCQIAKPSFPAKKRIHVTPYPVAETPQSPIKVSKLASKG
NELETTKLPNECKMIALDEQGDTSLSPFFWLREDDEDENGKASGEPSGQPTAYASQSNVA
PCFSDIKDSEDDTSPIKLAPTSQFNAEEAFDSEMFEWTQRACSPELCSTPLKKQTAGRTK
LDAFQEKDRLQQTQKMFNSKVNHDKPVECSKTDQETINDKKPRALLVKRGGTTNKKRLAK
TTGKHPKKCSNIEHEAEILIDSAEEAKDSSKKDEDAEQREIPNCERRIKKRGKKSTKTCP
NKNISDVAEAPLEVHAKSTERIQNEDADFMEILLPVLKSNTAEKIVELNMQEKTKKTRNQ
ATLPNKKRMKLSMDNDTTKTPGEVPGNANDEANTHIQENQKTVNNQVFPSKHSENDEVVG
NGSHRSRLEIQNKAVGESKGKRKRKIQAVKFAMDNNNSKVHVVLPENNGGKRNQSNGLAE
KTLSSGKQISSNNGDILRKCGNLQIVCAFCQNSNNTEESGEMVHYFNGKPVAVDYNEGVN
VIHSHKHCTEWAPDVYFEDDLAVNLAAELSRSKRIKCCCCGIKGAALGCYEKSCRKSFHF
TCAKLIRECRWDNDNFVMLCPLHSSSKLPSESSKTLEQKRKKRTANIELKASNRKNNYDK
IQNWIWPSGSPCKWVLCCSALTATEKDIISEFTTLTGVAISKAWSPAVTHVIASTDENGA
CKRTLKFLMGILEGKWILGIEWIKACLKAMKPVEEEKYEIAVDVHGIRGGPRLGRLRLIH
KEPKLFDNFRFYLVGDFAASYKGYIQDLVAAAGGTVLHRKPLTMDQEKLFHNNTSLLETL
VVYSVEMPGKQNRRAAGVSTRRVEAQALADVCGAKVAASSWIIDSIAASKLQPIN
NT seq
3048 nt
NT seq
+upstream
nt +downstream
nt
atgatggcggatctttctcatctcgagaagatgggaagagagctcaaatgccctatctgc
ttgagcctcttgaaatcggcagtttcccttggatgcaatcacgtcttctgcaacgcgtgt
attactgaattgatgaagtcggcatcggattgccctgtctgcaaaactcaatttcgtcga
agagaggttcgcgccgctcctcatatggataatttggtgactgtattcaaaagcatggag
gctgcagtcggagtaaacattttaaccacccaaatagggccttcaaccaaaaatccaggt
gatatagagaagaactctgatgcagaagaggctacattagaacataaaggaagatcaagg
aagaagagaccaagtggcaaaaagagtcagaaatcggaaaaggctgatgctatgtcagct
gattcatgtcaaatagcaaagccttctttccctgcaaagaaacggatacacgtgacacca
tatcccgtcgctgagacaccacaatcacccataaaggtctctaaactagcaagtaaaggc
aatgaattagagactactaagttgcctaatgaatgtaaaatgatagctttggacgaacaa
ggagatacttcactttcaccttttttttggttgagagaggatgatgaggatgaaaatggc
aaggcctctggggaaccaagtggccagccaacagcatatgcatcccaatctaatgttgct
ccttgcttcagtgacatcaaagattcagaagatgatacatctcctataaagttggctcct
acaagtcaatttaatgctgaagaagcttttgatagcgaaatgtttgagtggactcagaga
gcttgctctcctgagctctgctcaactcctttgaagaaacagacggcaggtaggactaaa
ctcgatgctttccaagaaaaagaccgtctgcaacaaactcaaaagatgttcaacagcaaa
gttaaccatgataagcctgtggaatgctcgaaaactgatcaagaaactattaatgataaa
aaacctagagcgctacttgtaaagagaggcggcactacaaataagaagaggctagcaaaa
actacaggaaagcatccgaagaaatgtagtaacattgagcatgaggctgaaattctaatt
gatagtgcagaggaagctaaggattcaagtaagaaagatgaggatgcagaacagagagaa
attcctaattgtgaaagaagaattaagaagaggggtaaaaagtccactaaaacttgccca
aacaagaatatttcagatgtagctgaagcaccactggaggtccatgccaaatctacagag
agaatccaaaatgaggatgcagacttcatggaaatattgctgcctgtcttgaaaagcaat
acagctgagaaaattgtggagctgaatatgcaagaaaagacgaagaaaactagaaatcag
gccacgttacccaataaaaagcgcatgaagctatcaatggataatgatacgactaagaca
ccaggtgaagttcctggtaacgctaacgatgaagcaaatacccatattcaagaaaatcaa
aagacggtcaataatcaagtcttcccatcaaagcatagtgaaaatgacgaagttgttgga
aatggaagccatagaagtagactggagattcaaaataaggcagtaggagaatcaaaagga
aagagaaaaaggaaaatccaagctgttaagtttgcaatggataacaataatagcaaagtt
catgttgttttgcctgaaaataatggtggtaaaagaaatcagtccaatggtttggcagag
aagaccttatcaagcggtaaacagatatcttccaacaatggagacatcttgaggaaatgt
ggaaatcttcagattgtatgtgctttctgtcaaaattccaacaacacagaggaatctgga
gagatggtgcactatttcaatggcaaaccagtggcagtagattacaatgaaggggtcaat
gtgatacattctcacaaacactgtactgaatgggcccctgatgtatactttgaagatgat
ttggctgtgaacctagctgctgaattatcacgaagtaagaggataaaatgctgctgttgt
ggcatcaagggagctgctcttgggtgttatgagaaaagctgtcgcaaaagctttcatttt
acttgtgctaaattgattcgagaatgtcgatgggataatgataattttgtgatgctttgc
ccacttcattcctcatccaaattgccaagtgaatcttccaaaaccctcgagcaaaaaaga
aagaagcgcaccgcaaacatagaattaaaagctagcaatcgcaaaaataactacgataag
attcagaattggatatggccttcaggatcaccttgcaagtgggttctttgctgctcagct
ctgactgctacagagaaggacataatatctgagttcacgacgttaaccggtgtagccatc
tcaaaagcttggagtccagcagtcactcatgtcattgcatctactgacgagaatggtgcg
tgcaaaagaaccctcaaatttttgatgggcatactagaagggaaatggatactaggcatt
gaatggatcaaagcatgcctgaaagcaatgaaacctgtcgaggaagaaaaatacgagatt
gcagttgatgtccatggaattcggggaggtcctagactaggaagattgaggctcatccat
aaggaaccaaaactctttgataattttcgattttatcttgttggagatttcgccgcatca
tataaggggtacattcaggatcttgtcgctgccgcggggggaacagttttacataggaaa
ccgcttacaatggatcaagagaagttgtttcataataatacttcattattggaaacctta
gtagtatacagtgttgagatgcctgggaagcagaacagaagggctgcgggcgttagtacc
aggcgagtcgaagcacaagctcttgctgatgtttgtggagccaaagtggcagctagttca
tggattatagactccattgctgcatccaaattgcagcccataaattga
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