Asparagus officinalis (garden asparagus): 109848989
Help
Entry
109848989 CDS
T05243
Name
(RefSeq) pre-mRNA-splicing factor SYF1
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
aof
Asparagus officinalis (garden asparagus)
Pathway
aof03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
aof00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
109848989
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aof03019
]
109848989
03041 Spliceosome [BR:
aof03041
]
109848989
Messenger RNA biogenesis [BR:
aof03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
109848989
Spliceosome [BR:
aof03041
]
Complex B
Other components
Prp19-related factors
109848989
Complex C
109848989
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_N
HAT_PRP39_C
TPR_14
Suf
Mad3_BUB1_I
TPR_15
TPR_19
TPR_2
TPR_12
ARM_TT21_C
UTP6_C
PPR
DUF3288
Motif
Other DBs
NCBI-GeneID:
109848989
NCBI-ProteinID:
XP_020274338
LinkDB
All DBs
Position
7:complement(13500733..13508885)
Genome browser
AA seq
892 aa
AA seq
DB search
MTASISTDLYPSQEDLLYEEELLRNQFSLKLWWRYLIAKSHAPFAKRSLLYERALRALPG
SYKLWHAYLRERLDVVRNLPISHSAYSSLNNTFERALVTMHKMPRIWIMYLQTLTDQRLI
TRARRTFDRALRALPITQHDRIWAPYLALVSLDGVPVETSLRVYRRYLLFDPSHIEDFIE
FLLNSGRWQEAAERLASVLNSDEFYSIKGKTKHQLWLELCELLTKHATEVSGLKVDAIIR
GGIRKYTNEVGRLWTSLADYYVRRGLYEKARDIFEEGLQTVLTVRDFSVIFESYAQFEQS
ALAAKLETAGEDEDEEDELANKFLKGFWLNDDDDADLRLARFENLFDRRPELLNSVLLRQ
NPHNVEQWHRRVKLFEGNPARQITTFAQAVQTVDPMKAVGKPHTLWVAFARLYENHKDLM
NARAIFDKAVQVNYKTVDNLASVWCEWAEMELRYKNFKGALDLMRRATAEPSVEVRRRIA
VDGNEPVQMKLHKSLRLWSFYVDLEESLGTLESTRAVYERILDLRIATPQIILNYAFLLE
EHKYFEDAFKVYERGVKIFKYPHVKDIWVTYLSKFVKRYGKAKLERARELFEHAVEKAPA
EDVKPIYLQYAKLEEEYGLAKRAMKVYDQAVKAVPNSEKLNMYDIYIARAAEIFGVPKTR
EIYEQAIESGLPDKDVKTMCMKYAELERSLGEIDRSRAIYVFASQFADPRSDPSFWKKWN
DFEVQHGNEDTFREMLRIKRSVLASFSQTHLILPENLMQKDQKLNLEEAVDTLKRAGVPE
DEMAALERQLAPSSASLPSSDVGRKMNFVSAGTIESKPDSMKKVANSEDIELPEDSDSDE
DKVDIAQKEVPAAVFGELASKATENQTKDGNAEEKGNGHLGALERIKRLRRQ
NT seq
2679 nt
NT seq
+upstream
nt +downstream
nt
atgactgcctcaatctccaccgatctctacccctcacaagaggacctcctctacgaagaa
gagctactccgcaaccagttcagcctcaagctgtggtggcgctatctcatcgccaaatcc
cacgctcccttcgccaagcgctctctcctctacgagcgcgctctcagagctctccctgga
tcctacaagctctggcacgcttatctccgcgagcgcctcgatgtcgtccgcaatctcccg
atctctcactcagcctactcctccctcaacaacaccttcgagagagccctcgtaacgatg
cacaagatgcctcggatctggatcatgtatctccaaaccctaactgatcaacggctcatc
actcgagctcggagaacctttgatcgggcccttcgagcgctgccgatcactcagcatgac
cggatctgggcgccgtaccttgccctggtttctctcgatggagtcccggtggagacctct
ctgagagtttaccgaaggtacttgcttttcgatccttcgcatattgaagattttatagag
tttctgttgaattctggccggtggcaagaggcggcggagaggttggcttcggttttgaat
agtgatgagttttattctattaaagggaagacaaagcatcagctttggctggagttgtgc
gagcttttgacgaaacatgctactgaggtttcggggttgaaggtggatgctataatcagg
ggagggataaggaagtatacgaatgaagttgggaggctgtggacttcgctggcggattat
tatgtgaggagagggctttatgagaaggcaagagatatttttgaggaggggttgcagaca
gtgctgacggttagggattttagtgtgatttttgagtcatacgcgcagtttgagcagagt
gcgttagcggcaaaattggagacggcgggggaggatgaagatgaggaagacgagttggca
aacaagttcttgaaggggttctggttgaatgatgatgatgatgcagatttgagacttgca
cggtttgagaatttgtttgatcggaggccggagttgctgaattctgtgcttttgaggcag
aatcctcacaatgtagagcaatggcatagacgggtgaaactatttgagggcaatcctgcc
aggcagataacaacttttgctcaggcagtgcaaactgtggatcccatgaaggcagtggga
aagcctcacaccctgtgggttgcttttgcacggctgtatgagaatcataaagatctcatg
aatgctagagcaatttttgacaaggcagtgcaagttaattataaaacagttgataatctt
gcaagcgtttggtgtgaatgggcagaaatggaacttaggtacaagaattttaagggagca
ttggacctgatgagacgggctactgcagaaccttcagttgaggtgagacgaagaattgct
gttgatggaaatgaaccagtacagatgaagctgcacaaatctctacggctatggagcttt
tatgttgacttggaggaaagcttaggaacattggaatccactcgtgctgtttatgagaga
attcttgatctgagaatagcaactccgcagatcatacttaattatgcttttcttcttgag
gagcataagtactttgaggatgcatttaaggtgtatgagagaggtgtaaagatatttaag
tatcctcatgttaaagatatatgggtcacttacctctccaagttcgtcaaaagatatggg
aaggcaaagttagagcgtgctagagagctatttgaacatgcagttgaaaaggcgcctgca
gaagatgtgaagccaatatatcttcaatatgctaaactcgaggaagaatatgggcttgca
aagagggcaatgaaagtctatgatcaagctgtcaaagctgttccaaacagtgaaaaattg
aatatgtatgacatttacattgccagggctgctgagatttttggtgttcccaaaaccaga
gagatttatgagcaagctattgagtctggtctcccagacaaagatgtaaaaacaatgtgc
atgaagtatgctgaacttgaaaggagcctaggagaaattgatcgttctcgtgccatatat
gtatttgcatcacaatttgcagacccccgatctgatcccagtttctggaagaaatggaat
gattttgaggttcagcatggcaatgaagatacattcagagaaatgcttcggatcaagcga
agtgtattagctagcttcagccagacacatttgattcttccggagaacttgatgcaaaag
gatcagaagttgaatcttgaggaagctgtggacactctgaagcgtgcaggggtccctgag
gacgaaatggctgctttagaaaggcaactggccccttcatctgctagcttgccttctagt
gatgttggtagaaagatgaattttgtcagcgccgggacaatagagtcaaagcctgatagt
atgaaaaaagttgcaaatagtgaggatattgaacttcctgaagatagcgactctgatgaa
gataaagttgacattgcacagaaggaagtacctgctgcagtgtttggtgagctagcatct
aaagctacagaaaatcagactaaagatggtaatgctgaagagaaaggcaacggtcactta
ggagctctagaaagaattaagaggctacgtcggcaatag
DBGET
integrated database retrieval system
