Asparagus officinalis (garden asparagus): 109849166
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Entry
109849166 CDS
T05243
Name
(RefSeq) LOW QUALITY PROTEIN: transducin beta-like protein 3
KO
K14555
U3 small nucleolar RNA-associated protein 13
Organism
aof
Asparagus officinalis (garden asparagus)
Pathway
aof03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
aof00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
109849166
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
aof03009
]
109849166
Ribosome biogenesis [BR:
aof03009
]
Eukaryotic type
90S particles
U3 small nucleolar RNA-associated proteins
109849166
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_CDC20-Fz
WD40_Prp19
WD40_WDHD1_1st
Utp13
EIF3I
Beta-prop_EML_2
WD40_MABP1-WDR62_2nd
Beta-prop_TEP1_2nd
WDR55
Beta-prop_EML
Beta-prop_CAF1B_HIR1
Beta-prop_WDR90_POC16_2nd
Beta-prop_SCAP
Beta-prop_WDR75_1st
WD40_MABP1-WDR62_1st
Beta-prop_DCAF4
Beta-prop_TEP1_C
Beta-prop_RIG_2nd
Beta-prop_EIPR1
NBCH_WD40
WDR90_beta-prop_4th
Beta-prop_IFT122_1st
Beta-prop_SPT8
ANAPC4_WD40
Beta-prop_IFT140_1st
Beta-prop_Nup120_160
WD_LRWD1
Beta-prop_NWD2_C
Beta-prop_DCAF12
Beta-prop_HPS5
Ge1_WD40
Beta-prop_Vps41
PROPPIN
UTP15_C
Beta-prop_WDR75_2nd
Cytochrom_D1
Beta-prop_NOL10_N
Motif
Other DBs
NCBI-GeneID:
109849166
NCBI-ProteinID:
XP_020274599
LinkDB
All DBs
Position
1:129729592..129742869
Genome browser
AA seq
880 aa
AA seq
DB search
MATTASQALKKNYRCVSSLQQFYSGGPFAVSSDGGLITCAXTLEGDSEAVTALALSPDDK
FLFSSSHSRLIRVWDLETLKCIRSWKGHEGPVMHMACHASGGLLATAGADKKVCVWDVDG
GFCTHFFRGHQGVVTSIIFHPDPKRLILFSGSDDTSVRVWSLESKKCIAVLEKHFSSVTS
LSVSQDGLTLLSAGRDQVVNLWDLHNYSFQMTVLVNEMVETVSAIYDGTAVSSCLGLCEL
PIEKKNKSISPAVYFLTVGDCGIISIWSSEGGTCIYKQRASDVICGPDKDNAERGFTSAV
ILPSDQGLLCVTGDQQFVFYHPEKSSEGAFQLNLYKRLVGYNEEILDMKFLGEEEKFLAV
ATNLEQVRVYDMASMSCSYVLAGHTDIVICLDTCISSSGRTLVLSGSKDNNVRLWDVERR
GCIGIGEGHTGAVGAVAFSRKGRNFFVSGSCDRTIKVWSIDGVSGDLDQEIKLKSKATVA
AHDKDINSLAVSPNDSLVCSGSEDRTASVWRLPDLVLTVSLRGHKRGIWSVEFSPVEQCV
ITSSGDKTVKIWAISDGSCLKTFEGHTSGVLRASFLTRGTQFVSCGGDGLVKLWTIKSNE
CIATYDQHEGKIWALAVGKKTEMLASGGTDAVVNLWHDSTVAEKQEAFHREQEATVRGQE
LENAVKDSDFTRAIQLAFELRRPHQLLDLFSQLCRRKGSDESLEKALTAFSKEELRVLLE
YIREWNTKPRLCHVAQFVLSCAFKIFSPTEIMEVKGVSELLEGLIPYSQRHFSRVDRLVR
STFLLDYVLVGMSVLDPDINATSSKSEAILPSDNRLVSSNNGQIDDKSTNENVSDDKMSL
PEMEERPSSKKRKSSKSKKSGEKKAKLASQKEVSAISVGA
NT seq
2643 nt
NT seq
+upstream
nt +downstream
nt
atggcgactacggcgtcgcaagccctgaagaagaactaccgctgtgtctcctccctgcag
cagttctacagcgggggaccgttcgccgtctcctccgacggcggcctcatcacctgcgcc
ntgactctcgagggggattcggaggccgtcactgccctagctctgagccccgacgataag
ttcctcttctcgtcgagtcacagccggcttattagggtttgggatcttgaaacactcaag
tgcatccgatcatggaagggacatgaaggtccagtaatgcacatggcttgccatgcttca
ggagggctgcttgctacagcgggggcagataaaaaagtctgtgtttgggatgtagatggt
ggattctgcacacatttcttcagaggtcatcagggggttgtgacaagcattattttccat
cctgatccaaagcgtttgattttgttttcaggaagtgatgatacaagcgtgcgcgtttgg
agtcttgaaagtaaaaagtgtattgcggtgcttgagaagcatttttcatcagtgacttcc
ttgtcagtgtctcaagatggtctgaccttgcttagtgctggaagagaccaggttgtcaat
ctgtgggacctgcacaattacagctttcagatgactgtcctagtaaatgagatggttgaa
actgtttctgcaatctatgatggtactgcagtatcttcttgcttggggctatgtgaattg
ccaattgagaagaaaaataagagtatttcaccagctgtttattttctgactgttggtgac
tgcggtatcataagcatatggagctctgaaggtggtacctgcatatataagcagcgagct
tcagatgtaatttgtggcccggataaagacaatgctgaaagaggattcacatcagctgtt
attttgccttctgaccaagggttgctttgtgtcactggtgaccagcaatttgttttctat
caccctgagaaatcttcagaaggggcttttcagttgaatttgtataaaagacttgttgga
tataacgaagaaattcttgatatgaaatttcttggtgaagaggaaaagtttcttgctgtg
gctacaaatttggaacaggttcgagtttatgacatggcatccatgtcatgctcttatgtt
ttggcagggcatacagatattgtcatatgcttggatacatgcatatcaagttctgggagg
acacttgttttaagcgggagcaaggacaataatgtaagattatgggatgttgaaagaaga
ggctgtataggaattggtgaaggacacacaggagctgttggagctgttgctttttcaaga
aaagggagaaactttttcgtcagcggcagttgtgatcgtacaatcaaggtgtggagtatt
gacggtgtctcaggagatttggatcaggagattaaacttaaatcaaaagcaactgtggct
gcacatgataaggatataaattctcttgctgtttccccaaatgatagtcttgtctgcagt
ggttctgaggatcgcactgcatccgtatggaggcttcccgatttagtactcacggtgtct
cttaggggacacaagagaggaatatggtctgtcgaattctcgccagtggagcaatgtgtg
ataacatcttctggcgacaagactgtaaaaatatgggccatttctgatggttcatgtttg
aaaacatttgaaggtcacacttccggtgtgttaagagcttcattcctcactcgtggcacc
cagtttgtttcatgcggtggtgatggtttggttaaactgtggactatcaagtcaaatgag
tgcattgctacgtatgatcagcatgaaggaaagatttgggcactggctgttggcaagaag
acagaaatgcttgcaagtggtggtactgatgctgtagttaatttgtggcatgatagcact
gttgcagagaagcaggaagctttccatagagaacaagaagccactgtgagaggtcaagag
ctggagaatgctgttaaagattctgattttacgagagcaattcaacttgcatttgaactc
cggagaccacaccaacttcttgatttgttttcgcaattgtgtaggagaaaaggttcagac
gagtcactagagaaggctctgaccgcttttagtaaggaagaacttcgtgtacttctggaa
tatatacgggagtggaacacaaagcccagactgtgccatgttgcgcaatttgttctttcc
tgcgcatttaaaattttctccccaaccgagattatggaggtaaaaggcgtgagtgagctt
cttgaaggccttataccttactctcagaggcacttcagcagagttgacaggctcgtaaga
agcacattcttattggattatgttcttgtcggaatgtcagtgttggatccagatatcaat
gcaacatcatccaaatcggaagctatattgccttcagataaccgattggtgtcctcaaat
aatgggcaaatagacgataaatcaacaaatgagaatgttagtgatgataaaatgtcgttg
ccagagatggaggaaaggccttcatccaagaaacggaagtccagcaaatcaaagaagtct
ggagaaaagaaagccaagttggcatcacaaaaagaggtttcggcaatttcagtgggggcg
taa
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