Asparagus officinalis (garden asparagus): 109849254
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Entry
109849254 CDS
T05243
Name
(RefSeq) mediator of RNA polymerase II transcription subunit 15a-like
KO
K22651
E3 ubiquitin-protein ligase RNF4 [EC:
2.3.2.27
]
Organism
aof
Asparagus officinalis (garden asparagus)
Brite
KEGG Orthology (KO) [BR:
aof00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
aof04121
]
109849254
Enzymes [BR:
aof01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
109849254
Ubiquitin system [BR:
aof04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
109849254
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
KIX_2
zf-C3HC4
zf-C3HC4_2
zf-RING_UBOX
zf-RING_5
zf-C3HC4_3
zf-RING_2
zf-rbx1
KIX
TRAF3_RING
zf-C3HC4_4
Zn_ribbon_6
zf-Nse
Zn_ribbon_3
zf-RING_4
zf-RING_6
Med15_N
zf-ANAPC11
zf-RING_10
DUF7560
Motif
Other DBs
NCBI-GeneID:
109849254
NCBI-ProteinID:
XP_020274656
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All DBs
Position
7:complement(67015720..67025635)
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AA seq
231 aa
AA seq
DB search
MGEAISVLPNWRDGIPQGGRQRIVNKIMELLQTHERTYVPSDHLDVLREVATKYEDRAYT
TASSVSDYLEVISLKVLTIRARQEQAQPSAPVNPAISNIAAVNQNRSHAGIQYEPVTLSH
PNQLNQRRHILANRSVVDCKRNLILIDDSSTKRIKISKPVPEKNAAAQEPTFTCPNCKGT
LVSPFATLCGHIFCEDCIKTSINRRKKCPSCEMKLTGKNSIHRVFLPGLLD
NT seq
696 nt
NT seq
+upstream
nt +downstream
nt
atgggggaggccatatcggttcttcccaactggagggacggcatcccccagggagggagg
caaaggatcgtcaataagataatggaacttttacagacacatgagcgaacatacgttcct
tccgaccacttggatgtgctaagagaggttgctaccaaatatgaggacagagcttatact
acggcttctagtgtgtcagactatctggaagtaatttctctcaaagtgctcactataaga
gcaaggcaggaacaggctcagccttctgctccagttaatccagcaatatcaaacatcgct
gctgtgaaccaaaatcgttcacatgcagggattcaatatgagccggtgactttgtcccat
cctaatcaacttaaccagcggcggcatattctagcgaacagatcagttgttgattgcaaa
aggaatttgattctgatagatgattccagtaccaagagaataaaaataagcaaaccagtg
cctgaaaagaatgcagcagctcaggagcctacttttacctgtcctaattgtaaaggcaca
ttggtttctcctttcgccactctctgtggccatattttctgtgaagactgcatcaagact
tccatcaacaggcgaaagaaatgcccctcctgtgaaatgaaacttactgggaaaaatagc
attcacagagttttccttccagggctactcgactga
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