Asparagus officinalis (garden asparagus): 109849301
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Entry
109849301 CDS
T05243
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit B
KO
K07466
replication factor A1
Organism
aof
Asparagus officinalis (garden asparagus)
Pathway
aof03030
DNA replication
aof03420
Nucleotide excision repair
aof03430
Mismatch repair
aof03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
aof00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
109849301
03420 Nucleotide excision repair
109849301
03430 Mismatch repair
109849301
03440 Homologous recombination
109849301
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
aof03000
]
109849301
03032 DNA replication proteins [BR:
aof03032
]
109849301
03400 DNA repair and recombination proteins [BR:
aof03400
]
109849301
Transcription factors [BR:
aof03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
109849301
DNA replication proteins [BR:
aof03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
109849301
DNA repair and recombination proteins [BR:
aof03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
109849301
MMR (mismatch excision repair)
109849301
DSBR (double strand breaks repair)
HR (homologous recombination)
109849301
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac-A_C
REPA_OB_2
Rep-A_N
tRNA_anti-codon
DUF223
CDC24_OB3
Motif
Other DBs
NCBI-GeneID:
109849301
NCBI-ProteinID:
XP_020274697
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All DBs
Position
7:117481951..117485823
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AA seq
605 aa
AA seq
DB search
MGKSVTPDAISKLLSNPSPVVPSEIPETIVQVVDLKPIGNSTTRFTFMANDGHKKLKAML
PSHFASEIHSGNLQNLGLIRILDYTCNSIPNQPDKALIVTKCEVVSPALEAEIKSEVKKE
DTGIVLKPKQEIVAKSAAQIVHEQRGNSAPVARMAMTRRVHPLVSLNPYQGIWTIKVRVT
NKGNLRSYKNARGEGSVFNVELTDEDGTQIQATMFNEAAKKFYPIFELGKVYYISKGTLR
LANKQFKTVRNDYEMNLNENSIVEEAAGEGSFIPETKYNFAKIDQLGSYVNGREVVDVIG
IVQNVSPTMSIRRKSNNETIPKRDITIADESNKTVTVSLWNDLATEVGQELLDMVDKSPV
VAIKSLKVGDFQGVSLSTLSKSTVTINPDLPETKKLRSWYDSEGKGTSMASVGSGVSSTS
KNGLRSMYSDRVFLSHITSDPTLGQDKPVFFSLNVYISLIKQDHTMWYRACKTCNKKVTE
AIGSGYWCEACQKNDDSCSLRYIMVMKVSDPSGEAWVSCFNEQAEQIIGCSADELDRIKT
EEGEDRYQLKLKEAMWTHHLFRVSVAQTEYMSEKRQRITVRSQSPVDYSAESRYLLEEIS
KMAVA
NT seq
1818 nt
NT seq
+upstream
nt +downstream
nt
atggggaaatcagtgacccccgatgcgatctctaagcttctctcaaacccatcgccggtc
gtgccgtcggagatcccggagaccatcgttcaggtcgtcgatctcaagcccatcggcaac
agcaccactcgattcactttcatggctaacgacggacataagaaactcaaggcaatgctt
ccatctcactttgcttcagaaatccattctggaaaccttcagaatcttgggctgatacga
attctcgattacacttgcaattctatccccaaccaacctgacaaggccttgatagtcaca
aaatgtgaggtagtttctcctgcacttgaagctgaaatcaaaagtgaagtgaaaaaggaa
gacaccgggattgtgttaaaacccaaacaggaaatcgtagccaaatcagcagcgcagatt
gttcatgaacaacgtgggaattctgcccctgttgcgcgaatggctatgactagaagagtc
catcctcttgtttctttgaacccttatcaaggtatctggaccataaaagttcgtgtcact
aataagggcaatctgcgttcatataaaaatgccaggggagaaggttctgtgttcaatgtt
gaactaactgatgaagatggtacccagatacaagccaccatgtttaatgaagctgcaaag
aaattttatcctatatttgaattgggaaaggtctactacatttctaaaggaactcttagg
cttgcaaacaaacagtttaaaactgttcgaaatgactatgagatgaacttaaatgagaac
tctatagttgaagaggcagctggagaagggtctttcattccagaaacaaaatataacttt
gcgaagattgatcaacttggatcctatgttaatgggagggaggttgtcgatgtaattggc
attgtgcaaaatgtttctcctaccatgagcattcgaaggaagagcaacaatgaaaccatc
ccaaagcgtgacatcacaatagcagacgaatcaaataaaactgtgacagtgtccctgtgg
aatgatctagctacggaagtaggccaggagttactggatatggttgacaaatccccagtt
gtagcaataaaatctctcaaagtaggagattttcaaggtgtatcactgtctacattgagc
aagagtactgtaactataaatcctgacttacccgagacgaagaagcttagatcttggtat
gattctgagggtaaaggtacttcaatggcatctgttggttccggtgttagctccacctca
aagaatggattaagatccatgtactctgatagagtgttcctttctcatattaccagtgac
ccaaccttgggtcaggataagcctgtcttttttagtttaaatgtctacattagtttaatc
aagcaagaccatacaatgtggtatcgagcatgcaagacctgcaacaaaaaggttactgaa
gctattgggtctggttattggtgcgaagcatgccaaaagaatgatgattcttgctctttg
agatacatcatggtaatgaaggtttctgatccgtctggtgaagcttgggtttcttgtttc
aatgagcaggcagagcaaatcataggatgcagtgcagatgaacttgatagaataaaaact
gaggaaggggaagatagataccaactcaagctaaaagaggctatgtggactcatcatttg
tttcgagttagtgttgctcagactgaatatatgagtgagaaaaggcagaggataacagtg
aggtctcaatccccggttgattactctgcagaatcaagatatctgcttgaagaaatatca
aagatggctgttgcttaa
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