Asparagus officinalis (garden asparagus): 109849310
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Entry
109849310 CDS
T05243
Name
(RefSeq) ubiquitin receptor RAD23d-like
KO
K10839
UV excision repair protein RAD23
Organism
aof
Asparagus officinalis (garden asparagus)
Pathway
aof03420
Nucleotide excision repair
aof04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
aof00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
109849310
09124 Replication and repair
03420 Nucleotide excision repair
109849310
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03051 Proteasome [BR:
aof03051
]
109849310
03400 DNA repair and recombination proteins [BR:
aof03400
]
109849310
Proteasome [BR:
aof03051
]
Eukaryotic proteasome
Proteasome interacting proteins (PIPs)
UBL-UBA shuttle proteins
109849310
DNA repair and recombination proteins [BR:
aof03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
XPC-HR23B-CETN2 complex
109849310
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
XPC-binding
UBA
ubiquitin
Rad60-SLD
Rad60-SLD_2
Crinkler
CUE
Dsc3_N
Ubiquitin_4
UBA_RAD5A
Ubiquitin_2
TECR_N
Motif
Other DBs
NCBI-GeneID:
109849310
NCBI-ProteinID:
XP_020274712
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Position
7:144198655..144204527
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AA seq
386 aa
AA seq
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MRIFIKTLKNSQFEIQVNPDDTVADVKKKIESSQGKSLYPSEEQMLIYQGKVLNDSSTIN
DNNVAEDKFIVIMLKKMKASSSGASAAATTAPTSQAPAGSVSSTPPVAAPATPLVQPSTI
TLPPTAASAPSSAVAAATETDSYGQAASNLVAGSNLEQTIQHILDMGGGTWDRDTVLRAL
RAAYNNPERAVEYLYSGIPEQAEVPLAQVPTGGQTTNSPVQAPQTAQPVPSSGPNANPLD
LFPQGLPSMGSNAGAGNLDFLRNNPQFRALQAMVQANPQVLQPMLQELGKQNPQVMRLIQ
EHQEEFLRLMNESGAEGGESNPLSQLAAAMPQTLTVTPEEREAIERLEAMGFARALVLQV
FFACNKNEEMTANYLLDHMHEFENDQ
NT seq
1161 nt
NT seq
+upstream
nt +downstream
nt
atgaggatcttcatcaagacattgaagaacagccagttcgagatacaagtcaaccccgac
gacactgtcgccgatgtgaagaagaagatagagagtagtcaagggaagagtttgtaccct
tcagaggagcagatgcttatttaccaagggaaagttcttaatgatagtagcactattaat
gataacaacgtggccgaggataaatttattgtcatcatgttgaaaaagatgaaggcatct
tcaagtggagcttcagccgctgccactacagcaccaaccagtcaggcacctgctggttct
gtgtcttccacccctccagttgcagccccagccacaccgttggttcagccttctacaatc
acccttcctccgactgccgcgtctgcaccatcttctgcagtcgctgcagccactgaaaca
gattcctatggtcaggcagcatcaaaccttgttgcaggaagcaacttggaacaaactatc
caacatattcttgacatgggcggaggaacttgggacagggatactgttcttcgtgcatta
cgtgctgcatataataatcctgagagagctgttgaatacttatattctggaattcccgag
caagcagaagttccattagcccaggtgcctacgggtggtcaaacaacgaattccccagtc
caagccccacaaacagcgcaacctgtgccttctagcggacccaatgctaatccattggat
ctctttcctcaaggtctacctagcatgggctccaatgctggtgcaggcaaccttgacttt
cttcgtaacaatccacagttccgggccctacaggccatggtgcaggcaaaccctcaagtt
ctccagccaatgcttcaggaactaggcaaacaaaatcctcaagtcatgaggcttattcag
gaacatcaagaggaatttcttcgtttaatgaatgagtcaggagcagaggggggagagagc
aaccctctaagccagctagcagctgcaatgccccaaactttgacagtgactcctgaggag
cgtgaagcaattgaacgacttgaggccatgggatttgctcgagctcttgtactgcaagtt
ttctttgcctgcaacaagaacgaagagatgacagcaaactaccttttggatcatatgcat
gagtttgagaacgaccagtag
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