Asparagus officinalis (garden asparagus): 109849436
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Entry
109849436 CDS
T05243
Name
(RefSeq) LOW QUALITY PROTEIN: histone-binding protein MSI1-like
KO
K10752
histone-binding protein RBBP4
Organism
aof
Asparagus officinalis (garden asparagus)
Pathway
aof03082
ATP-dependent chromatin remodeling
aof03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
aof00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
109849436
03083 Polycomb repressive complex
109849436
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
aof03036
]
109849436
Chromosome and associated proteins [BR:
aof03036
]
Eukaryotic type
Nucleosome assembly factors
Histone chaperones
CAF-1
109849436
Histone modification proteins
HAT complexes
HATB complex
109849436
HDAC complexes
Sin3A-HDAC complex
109849436
Polycomb repressive complex (PRC) and associated proteins
PRC2.1
109849436
PRC2.2
109849436
Centromeric chromatin formation proteins
Kinetochore proteins
MIS16-MIS18 complex
109849436
Heterochromatin formation proteins
Other heterochromatin formation proteins
109849436
Chromatin remodeling factors
NuRD complex
109849436
NuRF complex
109849436
NuRF complex (fruit fly)
109849436
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
CAF1C_H4-bd
WD40_Prp19
WD40_CDC20-Fz
Beta-prop_CAF1B_HIR1
Beta-prop_RIG_2nd
Beta-prop_EIPR1
Beta-prop_EML_2
Beta-prop_TEP1_2nd
WD40_WDHD1_1st
WDR55
Beta-prop_EML
EIF3I
WD40_RFWD3
Beta-prop_WDR90_POC16_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_WDR75_1st
ANAPC4_WD40
Beta-prop_RIG_1st
eIF2A
Beta-prop_HPS5
MIOS_WD40
Beta-prop_WDR19_1st
NBCH_WD40
WD40_MABP1-WDR62_1st
RMC1_N
Motif
Other DBs
NCBI-GeneID:
109849436
NCBI-ProteinID:
XP_020274859
LinkDB
All DBs
Position
7:141904264..141911677
Genome browser
AA seq
418 aa
AA seq
DB search
MAKDEDEFRGEVEERLINEEYKIWKKNTPFLYDLVITHALEWPSLTVQWMPXDYSVQKMI
LGTHTSDDEPNYLMLAQVQLPIDDAENDARQYDDDRGEIGGFGCASGKVQIIQQINHDGE
VNRARYMPQNPFIIATKTVSAEVYVFDYSKHPSKPPLDGACNPDLRLKGHNSEGYGLSWS
LFKQGHLLSGSDDAQICLWDINATPKNKSLDALQIFKVHEGVVEDVAWHLRHEYLFGSVG
DDQHLLIWDLRTPTANKPIQSVVAHQGEVNCLAFNPFNEWVVATGSTDKTVKLFDLRKLS
TALHTFDSHKEEVFQVGWSPKNETILASCCLGRRLMVWDLSRIDDEQTPEDAEDGPPELL
FIHGGHTSKISDFSWNPCEDWVIASVAEDNILQIWQMAENIYHDDDDVLPAEEPPRAT
NT seq
1257 nt
NT seq
+upstream
nt +downstream
nt
atggcgaaagacgaggacgaattcagaggcgaggtcgaggagcgcctcatcaacgaagag
tacaagatctggaagaagaacacgccgttcctctacgacctcgtgatcacccacgccctc
gagtggccgtcgttgaccgtacaatggatgccannggactactcagttcaaaagatgatt
cttgggacccacacctcagatgatgagcccaactatctgatgctcgctcaggttcagctc
ccgatcgatgacgcggagaacgacgcgaggcagtatgatgatgatcggggtgagattgga
gggtttggatgcgctagtggcaaggtgcaaatcattcagcagataaatcacgatggagaa
gttaatcgagctcgatacatgcctcagaatccttttattattgcaacaaagactgtcagt
gcagaggtgtatgtgtttgattacagcaagcatccatctaagcctcctctagatggtgca
tgcaatcctgatttgaggctgaagggccacaactctgaaggatatggtttgtcatggagt
ctttttaaacagggtcatcttttaagtggttcagatgatgctcaaatatgcttgtgggac
atcaatgcaacacccaaaaataaatctctagacgctctacaaatttttaaggtacatgaa
ggtgttgtggaagatgttgcctggcatttgaggcatgaatatttgtttggctcagttggg
gatgatcaacatttgctcatatgggatcttagaacgccaacagctaacaagccaattcaa
tctgtagttgctcatcaaggtgaggttaattgcttggcattcaatcccttcaatgagtgg
gttgtagcaacaggttcaactgataagactgtcaagttgtttgacctccgtaagctaagt
actgctctgcatacctttgattctcacaaagaagaggttttccaagttggctggagcccg
aagaatgagacaatactagcatcttgctgtcttggtaggaggctcatggtgtgggatctt
agcaggattgatgatgaacagacaccagaggatgcggaagatggtccaccagaacttctg
ttcatacatggtggccacactagcaagatctccgatttctcttggaacccttgcgaggat
tgggtcatcgccagcgtcgctgaagacaatatccttcagatatggcagatggctgagaat
atctaccatgatgatgatgacgtgttaccagcagaagaacctccaagagcgacataa
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