Asparagus officinalis (garden asparagus): 109849586
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Entry
109849586 CDS
T05243
Name
(RefSeq) LOW QUALITY PROTEIN: exosome complex component CSL4
KO
K07573
exosome complex component CSL4
Organism
aof
Asparagus officinalis (garden asparagus)
Pathway
aof03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
aof00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
109849586
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aof03019
]
109849586
Messenger RNA biogenesis [BR:
aof03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
109849586
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
109849586
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GFIT
Motif
Pfam:
EXOSC1
ECR1_N
RRP4_S1
Motif
Other DBs
NCBI-GeneID:
109849586
NCBI-ProteinID:
XP_020275024
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All DBs
Position
7:complement(69084120..69106343)
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AA seq
188 aa
AA seq
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MTMDVEDDMVTPGEVLGDSTELIAGRGXIHASLTGHRNIIPPQSDSTDKRSTVEVIGHKS
HGAVPEPGSIVIARVTKVMGRMASADIMCVGSKSVREKFTGTIRQQDVRATEIDKVDMYQ
SFRPGDIVRALVLSLGDARAYYLSTAKNELGVVSAQSITGGTMIPISWTEMQCPLTGQIE
QRKVAKVI
NT seq
567 nt
NT seq
+upstream
nt +downstream
nt
atgacaatggacgtcgaagacgatatggtcacccctggtgaggttttgggagattccact
gaattgatcgccggcagagggnncatccacgcatcgctcaccggtcaccgcaacatcatc
cctcctcaatctgattccaccgacaagcgttcaactgtagaagtcatcggtcacaaatct
catggcgccgtccctgagccaggatccattgttatcgctcgagtgacaaaggttatggga
agaatggcttcggcagatataatgtgtgtaggatcgaaatctgtgagggaaaagttcact
ggcacaataaggcagcaagatgttagagcaactgaaattgataaagtggacatgtaccag
tcttttcgccctggtgacattgttagagctttagttctctctcttggagatgcaagggca
tattacctttccacggcaaagaatgaactcggagttgtatccgcacaaagcataacaggt
ggtaccatgataccaatcagttggacagaaatgcaatgcccgttgactggccagattgaa
cagagaaaagttgcaaaagttatttag
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