Asparagus officinalis (garden asparagus): 109850024
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Entry
109850024 CDS
T05243
Name
(RefSeq) LOW QUALITY PROTEIN: uncharacterized protein LOC109850024
KO
K06100
symplekin
Organism
aof
Asparagus officinalis (garden asparagus)
Pathway
aof03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
aof00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
109850024
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
aof03021
]
109850024
03019 Messenger RNA biogenesis [BR:
aof03019
]
109850024
Transcription machinery [BR:
aof03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
109850024
Messenger RNA biogenesis [BR:
aof03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
109850024
U7-dependent histone pre-mRNA processing factors
109850024
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Symplekin_C
SYMPK_PTA1_N
HEAT_2
HEAT_EZ
Adaptin_N
INTS7_N
Motif
Other DBs
NCBI-GeneID:
109850024
NCBI-ProteinID:
XP_020275509
LinkDB
All DBs
Position
7:12205040..12242632
Genome browser
AA seq
1351 aa
AA seq
DB search
MVGMMAASWRERAEILINSVKSSSNALSKIEQLRQLKEVILVRDRSLLPEFVPQIVELQE
EKSSPVRRFIAELIGEIGTENEDLLPDMVPTLLFFLKDETPAVARQAITTGTNLFRNVLE
KIVTQGLFSSGIDDSLKLSWTWMLKFKNAVFQMAFQPGIDGIRLLAVKFVEALVLLYTSD
PELPSDPPNDAGSGFNISWLKGGHPLLNVGDLGIEAGQSLRLMLDQLKSPLVKSLSNSMV
IVLINSLSAIAKRRPSFYGRILPVLLCLDPASSVIKGVQVPGAHHALKNAFVACLKCTHS
SAAPWRARLVEALRTMSYGGIEEQEINLKKSSGSIVSTEEQLSNKEDKFSLQVCHDAHSD
VTRKRNIDQDNTDSTQDDITPGKRFRASPDLYEETAKEPQHTSHDSVHNEVSSIDSKDSN
EDEDSGPVQQLVGMFAALVAQGDKAAKSLEILISSISSELLAEVVMANIRHLPPSCPKSY
GDEESVPIASVSSISANKNLPLMQPSTVVSDTFSLSSAFPLISSLLNVPSVTSRDNDLQK
VSQEDEEKIKTEENIIISSTPVDSAIATPPVSIPASVDEFGPEKINSSTLLCENKTEKIM
STIPGLESVRSSDEVEDSLDASQTSTGELHGISQENDLSLGSTLPPDISSVTCMSEALSP
GLAVSDASPALSNTLVIPNQYVLPKMIIPDVNLNDDQKDNLQKLAYTRILEAYKQVSLSG
RSHMHLSLLAHLVVEFPLDLDPWELLQKHLLSDYANNEGHELTLRVLYRLYRESEQDQDF
LSSRTATSVYETFLLNVAQTLRDTFPASDKSLGRLLGEVPYLSDGALNLLESLCCPETKE
TNDKDFQSGDRVTQGLSAVWNLILLRPANRDRCLQIALKSAVHHMEEVRMKAIRLVANKL
FPMSSISQQIEDFAIKNLQSVRDDFPATDCIGADRLNSGLQMDSNLEKTTGTGILAVSLA
NSEVTSDCHSAKGSSSASLSEAQRCTSLYFALCTKKHSLLQHIFTIYENMSMGAKQAVHR
HIPILIRTIGSSSELLGIISDLPRGSKELLMQVLQTLTDGAIPSRDLISALRRLYDXXXX
RTYLRXKLIVIYLLFTSFCCLQDAEILIPILPSLSKEEVLAVFPQLVNLPMEKFQAALIR
LLQGLPQAGSSIAPAEILISIHAIDPEKDGVPLKKVMEACSACFEQRHVFTQQVLAKVLN
QLVEQIPLPLLFMRTVIQALSVYPALVEFVMEILSRLVNKQIWRYPKLWVGFLRCAIQTT
PQSFSVLLQLPATQLENALSKNPTLKPPLVDHANQPNIRSTLPRSTLVVLGLVSDPQPSG
QAQTSQSHAADTVSSAADVVTEVTQESADIR
NT seq
4056 nt
NT seq
+upstream
nt +downstream
nt
atggtagggatgatggcggcgagttggagagagagggccgagattctcataaactccgtg
aagtcttcgagcaacgctctttccaagatcgagcagcttcggcagttgaaggaggtgatt
ttggttagagatcggtctcttttgcccgaattcgtgcctcaaatcgtcgagttgcaggag
gagaagtcgagccctgttagaagattcatcgccgagctgattggtgaaattggaacagag
aatgaggatcttttgcctgatatggttcctactctgttattctttctaaaggatgaaacg
ccagcagttgctcgacaagccattaccactgggactaacttgtttaggaatgtattagaa
aagattgttactcagggcttgttctctagtggaatagatgattcattaaaattatcatgg
acctggatgctaaagttcaaaaatgccgtgtttcagatggcattccagcctgggattgat
ggaattagattgctagctgtgaagtttgttgaagctcttgtgctcctttacacatcagac
cctgaacttccttcagatccaccaaatgatgctggttctgggttcaacatatcttggctt
aaggggggacatcctttgcttaatgttggggacctagggatcgaagccggccagagcttg
agattaatgctcgaccaacttaagtcgccactagttaaatcactcagcaattcaatggtc
attgtgcttatcaatagtctctcagctattgcaaagagaaggccttctttttatggacgc
atactacctgtattactctgtttggacccggcgagctccgtaatcaaaggagtgcaagtc
ccaggtgcacaccatgccttgaagaatgcctttgtggcatgtctgaaatgtacacattca
agtgctgcaccgtggcgtgcccgcttggttgaagctttgagaaccatgagttatgggggt
attgaagaacaagaaattaatcttaaaaagagttctggaagtattgtcagcacagaggaa
caattatctaataaggaagataagttctcactgcaagtatgtcatgatgcacatagtgat
gttacacgtaaaagaaacatagatcaagacaacacagactcaacacaagatgatatcaca
cctggaaaacggtttagggcctcacctgacttgtatgaggaaactgctaaagaaccacaa
catacaagtcatgattcagttcataatgaggtatcatcaattgactctaaggattccaat
gaggatgaggattctggacctgtacagcaacttgttggtatgtttgctgccttagttgcc
cagggcgacaaagctgcaaagtcgctagaaattcttatttcaagtatctcttctgaattg
ttagctgaagttgttatggctaatatacgacatcttccacctagttgccctaaatcatac
ggggatgaagaatctgttcctattgctagtgtctcctccatctcagctaataagaatctt
cctctcatgcagccgtcaacagttgtttcagataccttttcattatcgagtgcattccct
ctgatttcatcattattgaatgttccttcagtaacatctcgtgataacgatttgcagaaa
gtaagtcaagaggatgaagagaaaattaagaccgaagagaatatcattattagctcgact
cctgttgatagtgctattgcaacaccgccagttagcatcccagcatctgttgatgaattt
ggtccggagaagatcaattcatccactctactttgtgaaaataagacagagaagataatg
agtacaatccctggcctggagtcagtaagatcttctgatgaagttgaggattcattggat
gcttctcaaacatctactggagagctgcatgggataagtcaggagaatgatttaagtttg
ggcagcacgcttcctcctgatatttcttcagtgacttgtatgtcagaagcgcttagcccg
ggtctagctgtctcggatgcaagccctgcgctttcaaatactcttgtcattccaaaccaa
tatgttcttccaaagatgatcatacctgatgtcaaccttaatgatgatcaaaaggataat
ctacaaaaattggcatatacacgcattcttgaagcttacaagcaagtttctttatctggt
cgatctcatatgcacttgtccttgcttgctcatttggtggttgagtttcctctagatcta
gatccatgggaacttctgcaaaaacatctgttgtctgactatgcaaataatgagggacac
gagttgacattgcgtgtcctatataggttatatcgggagtctgagcaggatcaagatttc
ctttcatctagaactgctacatcagtttatgaaacatttcttctgaatgtggcccaaacc
cttcgggatactttccctgcttcagataaatctcttggaagattactgggtgaagtaccg
tacctctcagacggggcacttaacttgttggagtcgttgtgctgcccagagaccaaggaa
acaaatgataaagattttcaaagtggcgacagagttacacaaggtcttagtgctgtgtgg
aatttaattttactgagacctgcaaatcgagatagatgccttcagattgctttaaagagt
gcagttcatcatatggaagaagtgagaatgaaggctatacgtctggtagcaaacaaatta
tttcccatgtcgagtatctctcaacagatcgaagattttgctattaagaatctacaatct
gtaagagatgattttcctgcgactgattgcatcggtgctgataggttgaattctggattg
caaatggatagcaatttggaaaaaactactggtacaggaattttggcagttagtcttgct
aacagtgaagttacatctgattgtcattcagcaaaaggttcatcatctgcttctctctca
gaggcgcaacggtgtacatcactttactttgcactttgcaccaagaagcattcacttctt
cagcatatttttactatttatgaaaacatgtccatgggcgcaaaacaggcagttcaccgc
catattccgatattgattcgcacaatagggtcatcatctgaactccttggaattatctcg
gatcttccaagaggaagcaaggaacttctcatgcaggttttacaaacacttacagatgga
gcaattccttctagagacttgatctccgctcttaggcgattatatgattnnnnnnnnnng
aggacatatttaagatgaaagcttattgtcatatatttactttttacttctttctgttgc
ttgcaggatgctgaaattctaataccgatattgccatctctatcaaaggaagaggtcctt
gccgtttttccacaacttgtcaatcttcctatggagaaattccaagctgcactcattcgt
ctgttgcaggggttaccacaagcaggttcgtccatcgctccagctgaaatattgatttct
atccatgctattgatccagagaaagatggagtacctctgaaaaaggttatggaggcttgc
tctgcttgctttgagcagcgacatgtgttcactcaacaggttttggctaaggtgttgaat
cagttggttgaacagattcctcttcctttgttgtttatgcgtactgtaatacaagctttg
agtgtatatcctgcattggtggaatttgtgatggaaattctgtcccggcttgtaaacaaa
cagatatggagatacccaaaattatgggttgggtttttaaggtgtgctatccagacaaca
cctcaatcattcagtgtattgttgcagttaccagcaacgcagctcgagaatgcattgagc
aaaaatccaactctgaagccaccattggttgatcatgcgaaccagccaaacattcgatct
actcttcctaggtcaacactagtggtattggggcttgtgagtgaccctcaaccctcaggt
caggcacagactagccagagtcatgcagcagacacagtcagctctgccgctgatgtggtg
actgaagtaactcaggaatctgcagatatcagatga
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