Asparagus officinalis (garden asparagus): 109850249
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Entry
109850249 CDS
T05243
Name
(RefSeq) exosome complex component RRP41-like
KO
K12587
exosome complex component MTR3
Organism
aof
Asparagus officinalis (garden asparagus)
Pathway
aof03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
aof00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
109850249
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aof03019
]
109850249
Messenger RNA biogenesis [BR:
aof03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
109850249
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
PvlArgDC
New_glue
MOSC
Motif
Other DBs
NCBI-GeneID:
109850249
NCBI-ProteinID:
XP_020275808
LinkDB
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Position
7:143485320..143490910
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AA seq
254 aa
AA seq
DB search
MATSSTTTYSPSQSLEKRQQQQQRRRLFREIDWKRSDGREFHQCRPAFLRTGAASAAAGS
AYVEFGTTKVIVSVFGPRESKKAMMYSDIGRLNCNVSYTTFSAPIRGQGSDHKEYSLLLH
KALEGAIILETFPKTTVDVFALILESGGSDLPAIISCASLALADAGIMMYDLVSAVSVSC
FGANLVIDPMAEEEACQDGSLMITCMPTRHEITQLTLTGEWSTAKINEAMDLCLDACSKL
AGIMRSCLKESVSS
NT seq
765 nt
NT seq
+upstream
nt +downstream
nt
atggcgacgagctccaccacaacatactcgccttcacaaagtctggagaagaggcagcaa
cagcagcagaggaggagactcttcagagaaatcgactggaagcgatccgacggtcgagag
ttccatcagtgcaggcctgcgtttctgagaacaggtgctgcaagtgctgcagcaggatct
gcatatgttgagtttggaacaaccaaggtcatcgtatctgtgttcggtccaagggaaagc
aagaaggcaatgatgtatagtgatattggtagattgaattgtaatgtgagctacacaaca
ttttctgctcctatacgtggtcagggatcagatcacaaagagtattcgttattgcttcat
aaagcactggagggtgctataattttagaaactttcccaaagactactgttgatgttttt
gcattgatattggaatctggtggaagcgatcttccagctattatatcttgcgcaagtctt
gccttggctgacgcaggaattatgatgtatgacctcgtttctgctgtctcagtgtcatgt
tttggagcgaacctagttattgatccgatggcagaggaggaagcttgccaagatggaagc
ctcatgatcacatgtatgcctactcgtcatgagatcactcaactcactctcactggagaa
tggtcgactgccaaaatcaacgaggcaatggatttgtgccttgatgcttgttcaaagctt
gccggcatcatgagatcatgtctaaaggaatcagtctcttcataa
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