KEGG   Asparagus officinalis (garden asparagus): 109850380
Entry
109850380         CDS       T05243                                 
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB7
  KO
K03015  DNA-directed RNA polymerase II subunit RPB7
Organism
aof  Asparagus officinalis (garden asparagus)
Pathway
aof03020  RNA polymerase
aof03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:aof00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    109850380
  09124 Replication and repair
   03420 Nucleotide excision repair
    109850380
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:aof03021]
    109850380
   03019 Messenger RNA biogenesis [BR:aof03019]
    109850380
   03400 DNA repair and recombination proteins [BR:aof03400]
    109850380
Transcription machinery [BR:aof03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol II specific subunits
     109850380
Messenger RNA biogenesis [BR:aof03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     109850380
DNA repair and recombination proteins [BR:aof03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase II complex
      109850380
SSDB
Motif
Pfam: S1 SHS2_Rpb7-N
Other DBs
NCBI-GeneID: 109850380
NCBI-ProteinID: XP_020275984
LinkDB
Position
7:complement(145346130..145352380)
AA seq 177 aa
MFFHIQLERNMQLHPRHFGPHLRDKLVAKLMKDVEGTCSGRHGFVVAITGVDDIGKGLIR
EGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ
SGDVPNYTTSDGSVKIQKECEVRLKIIGTRVDATEIFCIGTIKDDFLGVTSDPGAAA
NT seq 534 nt   +upstreamnt  +downstreamnt
atgttctttcacattcaattagagcgcaacatgcaactccacccccgccattttgggccc
cacctccgcgacaagctcgtcgccaagctcatgaaggacgtcgaaggcacctgcagtgga
cgacatgggttcgtcgtggctatcaccggcgtcgatgacattggaaagggcctcatcagg
gagggtactggatttgttactttccctgtcaagtatcaatgcgttgttttcagacctttt
aaaggggagattcttgaagctgtagttactatggtcaataagatgggtttctttgcggaa
gcgggaccggttcagatctttgtgtctaatcatttgatccctgatgatatggagttccag
tcaggagatgttccaaactacactacatcagatggatcggtgaaaattcaaaaggagtgt
gaagtacgattgaagataattggaacccgtgttgatgccaccgaaatcttctgcatcggc
acaataaaagatgatttcttgggcgtgactagtgatccaggggcagcggcatga

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