Asparagus officinalis (garden asparagus): 109850384
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Entry
109850384 CDS
T05243
Name
(RefSeq) CCR4-NOT transcription complex subunit 3-like isoform X1
KO
K12580
CCR4-NOT transcription complex subunit 3
Organism
aof
Asparagus officinalis (garden asparagus)
Pathway
aof03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
aof00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
109850384
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aof03019
]
109850384
Messenger RNA biogenesis [BR:
aof03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
109850384
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
109850384
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Not3
NOT2_3_5_C
DUF5965
Motif
Other DBs
NCBI-GeneID:
109850384
NCBI-ProteinID:
XP_020275993
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Position
7:137009008..137036537
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AA seq
873 aa
AA seq
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MGASRKLQGEIDRVLKKVQEGVDVFDSIWNKVYDTDNVNQKEKFEADLKKEIKKLQRYRD
QIKTWIQSSEIKDKKVSASYEQALMDARKLIEREMERFKICEKETKTKAFSKEGLGQQPK
TDPKEKAKSETRDWLNNAVGDLESQIDNFEAEVEGFSVKKGKMKNPRLTHLETSIGRHKA
HIMKLELILRLLDNDELSPDQVNDLKEFLEDYVECNQDDFERFGDVDGFYSSLPLEVEAL
EDLVTIPSGLTKAALSLASQQNTDQDQSEETASQDSNSDIALKTPPSKTGSMGSLVSTTS
PSLGPGMPTGPSPATAPSASARPIVGPSMAAILSSPVDVRGVMESPIAASQSLVNSNSVK
EDDDSTFPGRRPSPAIPEIALGRGISSGVSNQAAVTASSSMSPLNGISGYGDLGSVPAVS
DMSKREMLSVDEIMGNGDLTPSLASPLSNRAQQVSKSNDVTSSNGTSNVGASPAISGRLF
SPSITTGVQWRPQNSAVFENPNEMGQFHGRPEISPDQREKFLQRLQQVQQQGHNTLINVP
HLSGANPKQFSMQQQGSLLQQFNSQSSSLSPQLGLGLNIQSPGLSSVSSAQLQPPIHQQS
SQPSLISTAPKDSDVGHSKGDEQQQQNFTNHLNVESKTNSTLSKIVSDEGLKSPYKAACS
STLAESNQFSNNSDLLPGQPLQPTQSSASHGVIGRRSVPDVGANNFTASAGNTSIMHDQT
YNMQMLDAAFYKLPHPRDSERAKNYIPRHPVVTPPSFPQTQVGIVENPAFWERMSIEQLG
TDTLFFAFYYQQNTYQQYLAARELKRYSWRYHRKYNTWFQRHAEPNVTNDEYEKGTYVYF
DFHIADEPQNGWCQRIKNEFTFEYNYLEDELVE
NT seq
2622 nt
NT seq
+upstream
nt +downstream
nt
atgggggcgagcagaaaactccagggcgagatcgatagggtgctgaagaaagttcaggaa
ggcgtcgacgtcttcgatagtatctggaacaaggtttatgatactgataatgtgaatcag
aaggagaaattcgaagccgacctcaagaaggagattaagaagcttcagagataccgcgat
cagatcaagacatggattcaatcgagcgagataaaggacaaaaaggttagtgcctcttat
gagcaggctctcatggatgctcggaagcttattgagcgtgaaatggaaagatttaaaata
tgtgagaaggagacaaaaactaaagctttctccaaagaagggcttggccaacaacccaaa
actgatccaaaagagaaggctaaatccgagacaagagactggttaaacaatgcggttgga
gatttggagagccaaattgataattttgaagctgaagtggaaggattttccgtaaagaaa
ggaaaaatgaaaaatcctcggctgacgcatctagagacatccattggtcgtcacaaagct
cacataatgaagctggagttgattttgaggctgttggataatgatgaattgagtcctgat
caggttaatgaccttaaagaatttcttgaagattacgtggagtgcaaccaggacgatttc
gaaagatttggcgatgttgacggattttacagctctttaccactagaagtggaagcactt
gaagatctggtcactattccttctggacttactaaggcggctttgtcattagccagtcag
caaaatactgatcaagatcaaagtgaagaaacagcttctcaggacagtaattcagacatc
gctctgaaaactccaccctctaaaactggttctatggggtctttggtatcaacaacttcc
cccagccttggtcctggaatgccaacaggacctagcccagctactgcacctagtgcttct
gctcgaccgatagttgggcctagcatggctgcaatactttccagtccagtagatgttcga
ggtgtcatggaaagcccaattgctgcgtctcagtcacttgtaaactcaaattcagtcaag
gaagatgatgacagtaccttccctggccgcagaccatctccagctatacctgaaattgca
cttgggagaggcattagcagcggggtatctaatcaagcagctgtcactgcctccagttcc
atgagcccactcaatgggatttctggctatggagatcttggttcagttcctgcagtatct
gacatgagtaaacgagagatgttgagtgttgatgaaataatgggaaatggtgatcttact
ccatctttggcttctcctttaagtaatagagcgcagcaggtctccaaaagtaatgatgtg
acgagttcaaatggtactagtaatgttggagcgagtccagctattagtggaagacttttt
tcaccctccattactactggagttcagtggaggcctcaaaattcagctgtatttgagaat
ccaaacgagatgggtcaatttcatggaagacctgagatttctcctgatcagagggaaaag
tttctgcagagattgcaacaagtgcaacaacaaggtcataatactcttattaatgttcct
catctctcaggagcaaaccccaagcagttctctatgcagcaacagggctcacttttacaa
cagtttaattctcaatcttcatcactgtcacctcaattgggactgggacttaatatacaa
tcaccgggcctcagttctgtttcatctgcacagctacaaccccccatacatcaacaatca
tctcagccttcactgatctcaactgcacctaaagactcagatgtaggacactccaaagga
gatgagcagcagcagcagaattttaccaatcatttgaatgtggaatctaaaacgaattcc
actcttagcaagatcgtaagtgatgaaggtttgaagtcgccatacaaggctgcatgttct
tccactttggcagaaagtaaccaattttcaaataactctgatctcttacctgggcagcca
ttgcaaccaactcagtcttcggctagccatggtgttattggacgaagaagtgtcccagac
gtaggtgccaataactttaccgcctcagctgggaataccagcattatgcatgatcagaca
tacaacatgcagatgctggatgctgcattttacaaacttcctcatcccagggactcagaa
cgtgcaaagaactatattccaaggcatcctgtcgtaactcctccaagctttcctcaaact
caggtgggcattgttgaaaatcctgccttctgggaaagaatgagcattgagcagttgggc
actgacaccttgttctttgcattttattatcaacagaatacttaccagcaatatttggct
gcaagagaactaaaaaggtactcatggaggtatcacaggaaatataacacatggtttcaa
cggcatgcagaaccaaatgttactaatgatgaatacgaaaaaggaacatatgtctacttt
gattttcatattgcagatgaaccacagaatggatggtgccaaaggataaaaaatgaattc
acgttcgaatacaattatcttgaggatgagcttgtggaatag
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