KEGG   Asparagus officinalis (garden asparagus): 109850653
Entry
109850653         CDS       T05243                                 
Name
(RefSeq) RNA polymerase II transcription factor B subunit 4-like isoform X1
  KO
K03143  transcription initiation factor TFIIH subunit 3
Organism
aof  Asparagus officinalis (garden asparagus)
Pathway
aof03022  Basal transcription factors
aof03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:aof00001]
 09120 Genetic Information Processing
  09121 Transcription
   03022 Basal transcription factors
    109850653
  09124 Replication and repair
   03420 Nucleotide excision repair
    109850653
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:aof03021]
    109850653
   03400 DNA repair and recombination proteins [BR:aof03400]
    109850653
Transcription machinery [BR:aof03021]
 Eukaryotic type
  RNA polymerase II system
   Basal transcription factors
    TFIIH
     109850653
DNA repair and recombination proteins [BR:aof03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TFIIH complex
     109850653
SSDB
Motif
Pfam: Tfb4
Other DBs
NCBI-GeneID: 109850653
NCBI-ProteinID: XP_020276296
LinkDB
Position
7:147581588..147584572
AA seq 191 aa
MAPAPSKLYSDDVSLVVVLLDINPFFWGSTNSISFAKFLNHVIPFLNSLLLINQVNQVVL
IATGVNSCGYIYDSEGGQLGSEGGNVDAIFSEVLQKLEEFVAEDQKKIGKEEDRAIAGIV
PSLLSGSLSLALCCILYSGFLILKSYTMLKMLRVLGSIFLVLVLDAPLCVTSFTSCANAR
AAVSMKFPKEK
NT seq 576 nt   +upstreamnt  +downstreamnt
atggctcccgctccctcgaagctctactctgatgatgtcagccttgtcgtcgttctcctc
gacatcaaccccttcttttggggcagcacaaactcgatctcctttgccaaattccttaac
catgtaatacctttcttgaattcacttcttctcatcaaccaagtcaatcaagtagtttta
attgccactggagttaactcctgcggctatatatatgattccgaaggaggacaactagga
tctgaaggggggaatgtggatgcaattttttctgaggttcttcaaaagttggaggagttt
gtggcagaagatcagaagaagattgggaaggaagaagatagggccatagctggaattgtg
ccctcgttgctgtcaggctctctctccctcgctctctgttgtatcctttatagtggtttt
ctcattttgaaatcttacacaatgttgaaaatgttaagagttcttggatccatctttctt
gttttggtcttggatgctcctttatgtgtcactagctttacgtcatgtgcaaatgcacgt
gcagcagtgtcaatgaaatttccaaaagagaaatag

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